Gene annotation
Transcriptome id Sobic.001G351500.1
Synonym Sb01g033630, ATMC1, MCP1B, ATMCPB1, LOL3, AMC1
Functional annotation ICE-like protease p20 domain containing protein, putative, expressed
UniProt C5WXQ6
Pfam PF00656
Panther DB PTHR31773 PTHR31773:SF7
NCBI CDD KOG1546; Metacaspase involved in regulation of apoptosis
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004197cysteine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G02170 : metacaspase 1
RAP-DB (Rice) LOC_Os03g27120.1 : ICE-like protease p20 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052097 , Zm00025a002719 , Zm00025a002718
Brachypodium KQK21440
Barley HORVU4Hr1G090860.9 , HORVU4Hr1G090860.8 , HORVU4Hr1G090860.1 , HORVU4Hr1G090860.3 , HORVU4Hr1G090860.2 , HORVU4Hr1G090860.5 , HORVU4Hr1G090860.4 , HORVU4Hr1G090860.7 , HORVU4Hr1G090860.6 , HORVU4Hr1G011900.4 , HORVU4Hr1G011900.1 , HORVU4Hr1G011900.3 , HORVU4Hr1G011900.2 , HORVU3Hr1G095700.5 , HORVU3Hr1G095700.6 , HORVU3Hr1G095700.7 , HORVU3Hr1G095700.1 , HORVU3Hr1G095700.2 , HORVU3Hr1G095700.3 , HORVU3Hr1G095700.8 , HORVU3Hr1G095700.9 , HORVU4Hr1G090860.11 , HORVU4Hr1G090860.10 , HORVU4Hr1G090860.13 , HORVU4Hr1G090860.12 , HORVU3Hr1G020830.2 , HORVU3Hr1G020830.1 , HORVU1Hr1G071130.7 , HORVU1Hr1G071130.6 , HORVU1Hr1G071130.5 , HORVU1Hr1G071130.4 , HORVU1Hr1G071130.2 , HORVU1Hr1G071130.1 , HORVU1Hr1G071130.9 , HORVU1Hr1G071130.8
Wheat TraesCS4B02G383100 , TraesCS3B02G471700 , TraesCS4B02G071900 , TraesCS4D02G358100 , TraesCS1A02G432800 , TraesCS4D02G070500 , TraesCS1B02G468600 , TraesCS3B02G568100 , TraesCS3A02G114300 , TraesCS3B02G133900 , TraesCS4B02G381800 , TraesCS3A02G437700 , TraesCS3D02G430000 , TraesCS5A02G548200 , TraesCS5A02G548600 , TraesCS5A02G548600 , TraesCS1D02G442100 , TraesCS4D02G358800 , TraesCS4D02G358800 , TraesCS3D02G116800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G337600 WRKY116, expressed -
2 Sobic.003G053600 hydrolase, alpha/beta fold family protein, putative, expressed -
3 Sobic.001G232200 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
4 Sobic.004G083500 O-methyltransferase, putative, expressed -
5 Sobic.005G224300 O-methyltransferase, putative, expressed -
6 Sobic.003G353200 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Laccase 2 LAC2 (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
7 Sobic.009G162300 similar to Putative laccase-11(PubMedID : 29862293)@Laccase LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
8 Sobic.006G174300 cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase
9 Sobic.010G147200 aluminum-activated malate transporter, putative, expressed -
10 Sobic.001G379400 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.003G266300 - -
12 Sobic.002G228800 expressed protein -
13 Sobic.009G071300 HAD superfamily phosphatase, putative, expressed -
14 Sobic.003G053500 hydrolase, alpha/beta fold family protein, putative, expressed -
15 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.006G277700 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.008G016000 major facilitator superfamily antiporter, putative, expressed -
18 Sobic.002G377700 caltractin, putative, expressed -
19 Sobic.005G206000 dirigent, putative, expressed -
20 Sobic.010G168400 ferroportin1 domain containing protein, expressed K14685: SLC40A1, solute carrier family 40 (iron-regulated transporter), member 1


Gene co-expression network
sample Sobic001G351500 Sobic001G351500 Sobic003G337600 Sobic003G337600 Sobic001G351500--Sobic003G337600 Sobic003G053600 Sobic003G053600 Sobic001G351500--Sobic003G053600 Sobic001G232200 Sobic001G232200 Sobic001G351500--Sobic001G232200 Sobic004G083500 Sobic004G083500 Sobic001G351500--Sobic004G083500 Sobic005G224300 Sobic005G224300 Sobic001G351500--Sobic005G224300 Sobic003G353200 Sobic003G353200 Sobic001G351500--Sobic003G353200 Sobic009G162300 Sobic009G162300 Sobic001G351500--Sobic009G162300 Sobic006G174300 Sobic006G174300 Sobic001G351500--Sobic006G174300 Sobic010G147200 Sobic010G147200 Sobic001G351500--Sobic010G147200 Sobic006G277700 Sobic006G277700 Sobic003G337600--Sobic006G277700 Sobic001G379400 Sobic001G379400 Sobic003G337600--Sobic001G379400 Sobic003G337600--Sobic006G174300 Sobic003G337600--Sobic003G053600 Sobic003G337600--Sobic010G147200 Sobic003G337600--Sobic001G351500 Sobic002G063600 Sobic002G063600 Sobic003G337600--Sobic002G063600 Sobic010G031700 Sobic010G031700 Sobic003G337600--Sobic010G031700 Sobic010G087900 Sobic010G087900 Sobic003G337600--Sobic010G087900 Sobic003G053600--Sobic003G353200 Sobic005G063400 Sobic005G063400 Sobic003G053600--Sobic005G063400 Sobic003G053600--Sobic006G174300 Sobic003G053600--Sobic010G031700 Sobic003G053600--Sobic006G277700 Sobic002G146000 Sobic002G146000 Sobic003G053600--Sobic002G146000 Sobic007G057400 Sobic007G057400 Sobic003G053600--Sobic007G057400 Sobic005G206000 Sobic005G206000 Sobic003G053600--Sobic005G206000 Sobic008G164450 Sobic008G164450 Sobic003G053600--Sobic008G164450 Sobic005G166700 Sobic005G166700 Sobic001G232200--Sobic005G166700 Sobic001G487800 Sobic001G487800 Sobic001G232200--Sobic001G487800 Sobic010G267200 Sobic010G267200 Sobic001G232200--Sobic010G267200 Sobic009G150500 Sobic009G150500 Sobic001G232200--Sobic009G150500 Sobic001G232200--Sobic005G224300 Sobic005G202300 Sobic005G202300 Sobic001G232200--Sobic005G202300 Sobic001G232200--Sobic003G353200 Sobic003G280000 Sobic003G280000 Sobic001G232200--Sobic003G280000 Sobic002G228800 Sobic002G228800 Sobic001G232200--Sobic002G228800 Sobic004G083500--Sobic003G353200 Sobic001G182200 Sobic001G182200 Sobic004G083500--Sobic001G182200 Sobic003G167300 Sobic003G167300 Sobic004G083500--Sobic003G167300 Sobic001G319300 Sobic001G319300 Sobic004G083500--Sobic001G319300 Sobic002G377700 Sobic002G377700 Sobic004G083500--Sobic002G377700 Sobic003G064800 Sobic003G064800 Sobic004G083500--Sobic003G064800 Sobic003G319400 Sobic003G319400 Sobic004G083500--Sobic003G319400 Sobic009G186500 Sobic009G186500 Sobic004G083500--Sobic009G186500 Sobic003G257400 Sobic003G257400 Sobic004G083500--Sobic003G257400 Sobic009G071300 Sobic009G071300 Sobic005G224300--Sobic009G071300 Sobic005G224300--Sobic001G232200 Sobic005G224300--Sobic001G351500 Sobic003G266300 Sobic003G266300 Sobic005G224300--Sobic003G266300 Sobic005G046801 Sobic005G046801 Sobic005G224300--Sobic005G046801 Sobic005G224300--Sobic001G487800 Sobic001G018600 Sobic001G018600 Sobic005G224300--Sobic001G018600 Sobic001G232400 Sobic001G232400 Sobic005G224300--Sobic001G232400 Sobic007G066824 Sobic007G066824 Sobic005G224300--Sobic007G066824 Sobic007G037600 Sobic007G037600 Sobic003G353200--Sobic007G037600 Sobic003G353200--Sobic003G280000 Sobic003G353200--Sobic002G146000 Sobic003G353200--Sobic010G031700 Sobic003G353200--Sobic005G202300 Sobic003G353200--Sobic003G053600 Sobic006G106900 Sobic006G106900 Sobic003G353200--Sobic006G106900 Sobic001G218400 Sobic001G218400 Sobic003G353200--Sobic001G218400 Sobic003G353200--Sobic009G162300 Sobic009G162300--Sobic003G353200 Sobic009G162300--Sobic002G146000 Sobic009G162300--Sobic003G053600 Sobic003G183300 Sobic003G183300 Sobic009G162300--Sobic003G183300 Sobic009G162300--Sobic005G166700 Sobic009G162300--Sobic003G280000 Sobic006G003100 Sobic006G003100 Sobic009G162300--Sobic006G003100 Sobic009G162300--Sobic003G257400 Sobic004G047600 Sobic004G047600 Sobic009G162300--Sobic004G047600 Sobic006G174300--Sobic006G277700 Sobic006G174300--Sobic005G202300 Sobic001G058300 Sobic001G058300 Sobic006G174300--Sobic001G058300 Sobic006G174300--Sobic003G053600 Sobic006G174300--Sobic003G319400 Sobic006G174300--Sobic003G353200 Sobic006G174300--Sobic010G031700 Sobic006G174300--Sobic001G379400 Sobic006G174300--Sobic002G377700 Sobic010G147200--Sobic001G379400 Sobic001G014700 Sobic001G014700 Sobic010G147200--Sobic001G014700 Sobic010G147200--Sobic006G003100 Sobic006G089000 Sobic006G089000 Sobic010G147200--Sobic006G089000 Sobic010G147200--Sobic006G277700 Sobic001G502000 Sobic001G502000 Sobic010G147200--Sobic001G502000 Sobic010G147200--Sobic006G174300 Sobic001G234900 Sobic001G234900 Sobic010G147200--Sobic001G234900 Sobic010G147200--Sobic010G031700
Octagon: transcription factors


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