Gene annotation
Transcriptome id Sobic.009G162300.1
Synonym LAC17, ATLAC17, Sb09g022460
Functional annotation similar to Putative laccase-11 (PubMedID : 29862293)
Laccase LAC17 (At) (PubMedID : 27208977)
laccase precursor protein, putative, expressed
UniProt A0A1B6P9J4
Pfam PF07731 PF07732 PF00394
Panther DB PTHR11709 PTHR11709:SF67
NCBI CDD -
KEGG Orthology K05909; laccase
Gene Ontology GO:0016491; oxidoreductase activity GO:0005507copper ion binding


Orthologs (automatic annotation)
TAIR AT5G60020 : laccase 17
RAP-DB (Rice) LOC_Os05g38390.1 : laccase precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a039673 , Zm00025a026896 , Zm00025a026897 , Zm00025a043896 , Zm00025a029245 , Zm00025a026887
Brachypodium KQK10535 , KQK05918 , KQK10527 , KQK10526
Barley HORVU1Hr1G072530.2 , HORVU4Hr1G059930.4 , HORVU1Hr1G072530.1 , HORVU1Hr1G072530.6 , HORVU1Hr1G072530.7 , HORVU1Hr1G072530.4 , HORVU1Hr1G072530.5 , HORVU3Hr1G086200.5 , HORVU3Hr1G086200.4 , HORVU1Hr1G072530.8 , HORVU1Hr1G072530.9 , HORVU3Hr1G086200.1 , HORVU3Hr1G086200.3 , HORVU3Hr1G086200.2 , HORVU3Hr1G086100.2 , HORVU4Hr1G059930.7 , HORVU3Hr1G086100.3 , HORVU3Hr1G086200.8 , HORVU4Hr1G059930.2 , HORVU4Hr1G059930.3 , HORVU3Hr1G086200.7 , HORVU3Hr1G086200.6 , HORVU3Hr1G086100.8 , HORVU3Hr1G086100.1 , HORVU3Hr1G086100.6 , HORVU3Hr1G086100.7 , HORVU3Hr1G086100.4 , HORVU3Hr1G086100.5 , HORVU1Hr1G072470.8 , HORVU4Hr1G059930.5 , HORVU1Hr1G072530.3 , HORVU7Hr1G039310.1 , HORVU2Hr1G041290.2 , HORVU2Hr1G041290.3 , HORVU4Hr1G059930.6 , HORVU2Hr1G041290.1 , HORVU4Hr1G059930.1 , HORVU2Hr1G041290.4 , HORVU2Hr1G041290.5 , HORVU4Hr1G059930.8 , HORVU4Hr1G059930.9 , HORVU4Hr1G059930.12 , HORVU4Hr1G059930.13 , HORVU4Hr1G059930.10 , HORVU4Hr1G059930.11 , HORVU7Hr1G039250.8 , HORVU7Hr1G039250.9 , HORVU7Hr1G039250.1 , HORVU1Hr1G072470.9 , HORVU7Hr1G096350.1 , HORVU7Hr1G096350.6 , HORVU7Hr1G096350.4 , HORVU7Hr1G096350.5 , HORVU1Hr1G072470.10 , HORVU1Hr1G072470.3 , HORVU1Hr1G072470.2 , HORVU1Hr1G072470.1 , HORVU1Hr1G072470.7 , HORVU1Hr1G072470.6 , HORVU1Hr1G072470.5 , HORVU1Hr1G072470.4 , HORVU7Hr1G096350.2 , HORVU7Hr1G096350.3 , HORVU7Hr1G039250.2 , HORVU7Hr1G039250.3 , HORVU7Hr1G039250.4 , HORVU7Hr1G039250.6 , HORVU7Hr1G039250.7 , HORVU3Hr1G086100.9
Wheat TraesCS1D02G282600 , TraesCS1B02G293100 , TraesCS2A02G206500 , TraesCS4B02G208000 , TraesCS4B02G208000 , TraesCS6D02G361600 , TraesCS3B02G393500 , TraesCS4A02G096400 , TraesCS3D02G354200 , TraesCS3B02G392700 , TraesCS3D02G354400 , TraesCS2D02G209800 , TraesCS3A02G360400 , TraesCS3D02G354900 , TraesCS2B02G233500 , TraesCS7A02G191900 , TraesCS2B02G233700 , TraesCS7B02G097100 , TraesCS3A02G361100 , TraesCS1B02G292600 , TraesCS7D02G192900 , TraesCS1D02G283000 , TraesCS3A02G360600 , TraesCS1A02G283900 , TraesCS7D02G193100 , TraesCS4D02G208900 , TraesCS3B02G393000 , TraesCS1A02G283400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G353200 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Laccase 2 LAC2 (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
2 Sobic.002G146000 "Localized in cytoplasm, involved in the process of drought defense"(PubMedID : 27231650)@dehydrogenase, putative, expressed K09753: cinnamoyl-CoA reductase
3 Sobic.003G053600 hydrolase, alpha/beta fold family protein, putative, expressed -
4 Sobic.003G183300 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.005G166700 sulfotransferase domain containing protein, expressed -
6 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.006G003100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1295 domain containing protein, putative, expressed -
8 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
9 Sobic.004G047600 plant-specific domain TIGR01627 family protein, expressed -
10 Sobic.001G232200 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
11 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -
12 Sobic.004G083500 O-methyltransferase, putative, expressed -
13 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
14 Sobic.007G037600 C4-dicarboxylate transporter/malic acid transport protein, expressed -
15 Sobic.004G231700 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
17 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
18 Sobic.010G147200 aluminum-activated malate transporter, putative, expressed -
19 Sobic.010G031700 thaumatin, putative, expressed -
20 Sobic.010G113100 cytokinin-O-glucosyltransferase 2, putative, expressed -


Gene co-expression network
sample Sobic009G162300 Sobic009G162300 Sobic003G353200 Sobic003G353200 Sobic009G162300--Sobic003G353200 Sobic002G146000 Sobic002G146000 Sobic009G162300--Sobic002G146000 Sobic003G053600 Sobic003G053600 Sobic009G162300--Sobic003G053600 Sobic003G183300 Sobic003G183300 Sobic009G162300--Sobic003G183300 Sobic005G166700 Sobic005G166700 Sobic009G162300--Sobic005G166700 Sobic003G280000 Sobic003G280000 Sobic009G162300--Sobic003G280000 Sobic006G003100 Sobic006G003100 Sobic009G162300--Sobic006G003100 Sobic003G257400 Sobic003G257400 Sobic009G162300--Sobic003G257400 Sobic004G047600 Sobic004G047600 Sobic009G162300--Sobic004G047600 Sobic007G037600 Sobic007G037600 Sobic003G353200--Sobic007G037600 Sobic003G353200--Sobic003G280000 Sobic003G353200--Sobic002G146000 Sobic010G031700 Sobic010G031700 Sobic003G353200--Sobic010G031700 Sobic005G202300 Sobic005G202300 Sobic003G353200--Sobic005G202300 Sobic003G353200--Sobic003G053600 Sobic006G106900 Sobic006G106900 Sobic003G353200--Sobic006G106900 Sobic001G218400 Sobic001G218400 Sobic003G353200--Sobic001G218400 Sobic003G353200--Sobic009G162300 Sobic007G073000 Sobic007G073000 Sobic002G146000--Sobic007G073000 Sobic006G092700 Sobic006G092700 Sobic002G146000--Sobic006G092700 Sobic002G146000--Sobic007G037600 Sobic002G146000--Sobic003G353200 Sobic003G000100 Sobic003G000100 Sobic002G146000--Sobic003G000100 Sobic006G085700 Sobic006G085700 Sobic002G146000--Sobic006G085700 Sobic002G146000--Sobic010G031700 Sobic003G215300 Sobic003G215300 Sobic002G146000--Sobic003G215300 Sobic004G106100 Sobic004G106100 Sobic002G146000--Sobic004G106100 Sobic003G053600--Sobic003G353200 Sobic005G063400 Sobic005G063400 Sobic003G053600--Sobic005G063400 Sobic006G174300 Sobic006G174300 Sobic003G053600--Sobic006G174300 Sobic003G053600--Sobic010G031700 Sobic006G277700 Sobic006G277700 Sobic003G053600--Sobic006G277700 Sobic003G053600--Sobic002G146000 Sobic007G057400 Sobic007G057400 Sobic003G053600--Sobic007G057400 Sobic005G206000 Sobic005G206000 Sobic003G053600--Sobic005G206000 Sobic008G164450 Sobic008G164450 Sobic003G053600--Sobic008G164450 Sobic004G271800 Sobic004G271800 Sobic003G183300--Sobic004G271800 Sobic003G183300--Sobic002G146000 Sobic003G183300--Sobic003G000100 Sobic010G028100 Sobic010G028100 Sobic003G183300--Sobic010G028100 Sobic003G183300--Sobic006G003100 Sobic003G183300--Sobic006G092700 Sobic006G135300 Sobic006G135300 Sobic003G183300--Sobic006G135300 Sobic008G135300 Sobic008G135300 Sobic003G183300--Sobic008G135300 Sobic010G070400 Sobic010G070400 Sobic003G183300--Sobic010G070400 Sobic001G232200 Sobic001G232200 Sobic005G166700--Sobic001G232200 Sobic007G008600 Sobic007G008600 Sobic005G166700--Sobic007G008600 Sobic009G150500 Sobic009G150500 Sobic005G166700--Sobic009G150500 Sobic005G166700--Sobic003G280000 Sobic005G166700--Sobic006G106900 Sobic005G166700--Sobic003G353200 Sobic006G103300 Sobic006G103300 Sobic005G166700--Sobic006G103300 Sobic005G166700--Sobic003G257400 Sobic005G166700--Sobic005G202300 Sobic003G280000--Sobic005G202300 Sobic003G280000--Sobic003G353200 Sobic003G280000--Sobic006G106900 Sobic003G319400 Sobic003G319400 Sobic003G280000--Sobic003G319400 Sobic003G280000--Sobic010G031700 Sobic003G053200 Sobic003G053200 Sobic003G280000--Sobic003G053200 Sobic003G280000--Sobic003G257400 Sobic009G181600 Sobic009G181600 Sobic003G280000--Sobic009G181600 Sobic003G280000--Sobic001G218400 Sobic006G003100--Sobic003G000100 Sobic010G152400 Sobic010G152400 Sobic006G003100--Sobic010G152400 Sobic006G003100--Sobic010G031700 Sobic006G003100--Sobic004G106100 Sobic007G086300 Sobic007G086300 Sobic006G003100--Sobic007G086300 Sobic002G233200 Sobic002G233200 Sobic006G003100--Sobic002G233200 Sobic004G322100 Sobic004G322100 Sobic006G003100--Sobic004G322100 Sobic004G306900 Sobic004G306900 Sobic006G003100--Sobic004G306900 Sobic007G158800 Sobic007G158800 Sobic006G003100--Sobic007G158800 Sobic003G257400--Sobic003G000100 Sobic003G257400--Sobic007G086300 Sobic003G257400--Sobic004G106100 Sobic003G257400--Sobic006G106900 Sobic001G414800 Sobic001G414800 Sobic003G257400--Sobic001G414800 Sobic003G257400--Sobic003G353200 Sobic003G257400--Sobic003G280000 Sobic003G257400--Sobic006G003100 Sobic003G257400--Sobic004G306900 Sobic001G360700 Sobic001G360700 Sobic004G047600--Sobic001G360700 Sobic003G352700 Sobic003G352700 Sobic004G047600--Sobic003G352700 Sobic007G047300 Sobic007G047300 Sobic004G047600--Sobic007G047300 Sobic001G471800 Sobic001G471800 Sobic004G047600--Sobic001G471800 Sobic004G047600--Sobic002G146000 Sobic002G167600 Sobic002G167600 Sobic004G047600--Sobic002G167600 Sobic002G254900 Sobic002G254900 Sobic004G047600--Sobic002G254900 Sobic002G203900 Sobic002G203900 Sobic004G047600--Sobic002G203900 Sobic004G047600--Sobic009G162300
Octagon: transcription factors


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