Gene annotation
Transcriptome id Sobic.004G231700.1
Synonym Sb04g027540, AtMYB93, MYB93
Functional annotation MYB family transcription factor, putative, expressed
UniProt C5XYD8
Pfam PF00249
Panther DB PTHR10641 PTHR10641:SF480
NCBI CDD -
KEGG Orthology K09422; transcription factor MYB, plant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G34670 : myb domain protein 93
RAP-DB (Rice) LOC_Os06g11780.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a002636 , Zm00025a022149 , Zm00025a024212
Brachypodium PNT77340 , KQK01840
Barley HORVU6Hr1G078300.1 , HORVU6Hr1G078300.2 , HORVU6Hr1G078300.3 , HORVU6Hr1G078270.4 , HORVU6Hr1G078270.5 , HORVU6Hr1G078270.6 , HORVU6Hr1G078270.7 , HORVU6Hr1G078270.1 , HORVU6Hr1G078270.2 , HORVU6Hr1G078270.3 , HORVU6Hr1G078270.8 , HORVU1Hr1G078940.1
Wheat TraesCS7A02G333200 , TraesCS7A02G333200 , TraesCS6B02G349200 , TraesCS7A02G205100 , TraesCS1B02G100600 , TraesCS6D02G298100 , TraesCS6D02G298100 , TraesCS3A02G251200 , TraesCS3A02G251200 , TraesCS6A02G319000 , TraesCS7B02G112400 , TraesCS7B02G112400 , TraesCS7D02G340300 , TraesCS7B02G244200 , TraesCS1B02G005200 , TraesCS6B02G349100 , TraesCS6D02G298200 , TraesCS6D02G298200 , TraesCS1A02G366100 , TraesCS6A02G318900 , TraesCS7D02G208000
Populus PNT35412 , PNT27970


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G059600 LTPL99 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.003G341500 lignin modification(PubMedID : 28529519)@laccase precursor protein, putative, expressed K05909: laccase
3 Sobic.003G020200 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.002G050300 LTPL100 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.003G053600 hydrolase, alpha/beta fold family protein, putative, expressed -
6 Sobic.010G093300 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.003G353200 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Laccase 2 LAC2 (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
8 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.009G162300 similar to Putative laccase-11(PubMedID : 29862293)@Laccase LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
10 Sobic.006G174300 cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase
11 Sobic.001G059500 LTPL74 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
13 Sobic.008G164450 - -
14 Sobic.005G063400 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
15 Sobic.001G058300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein At4g06744 precursor, putative, expressed -
16 Sobic.003G368100 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
17 Sobic.002G053700 auxin-induced protein 5NG4, putative, expressed -
18 Sobic.001G068500 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
19 Sobic.005G206000 dirigent, putative, expressed -
20 Sobic.006G277700 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic004G231700 Sobic004G231700 Sobic001G059600 Sobic001G059600 Sobic004G231700--Sobic001G059600 Sobic003G341500 Sobic003G341500 Sobic004G231700--Sobic003G341500 Sobic003G020200 Sobic003G020200 Sobic004G231700--Sobic003G020200 Sobic002G050300 Sobic002G050300 Sobic004G231700--Sobic002G050300 Sobic003G053600 Sobic003G053600 Sobic004G231700--Sobic003G053600 Sobic010G093300 Sobic010G093300 Sobic004G231700--Sobic010G093300 Sobic003G353200 Sobic003G353200 Sobic004G231700--Sobic003G353200 Sobic003G280000 Sobic003G280000 Sobic004G231700--Sobic003G280000 Sobic009G162300 Sobic009G162300 Sobic004G231700--Sobic009G162300 Sobic003G368100 Sobic003G368100 Sobic001G059600--Sobic003G368100 Sobic001G059600--Sobic010G093300 Sobic001G059600--Sobic004G231700 Sobic001G059600--Sobic003G341500 Sobic001G059600--Sobic002G050300 Sobic001G068500 Sobic001G068500 Sobic001G059600--Sobic001G068500 Sobic005G127200 Sobic005G127200 Sobic001G059600--Sobic005G127200 Sobic001G059500 Sobic001G059500 Sobic001G059600--Sobic001G059500 Sobic002G365801 Sobic002G365801 Sobic001G059600--Sobic002G365801 Sobic001G144800 Sobic001G144800 Sobic003G341500--Sobic001G144800 Sobic003G341500--Sobic001G068500 Sobic004G266700 Sobic004G266700 Sobic003G341500--Sobic004G266700 Sobic003G341500--Sobic001G059600 Sobic003G341500--Sobic003G368100 Sobic003G341500--Sobic005G127200 Sobic003G341500--Sobic004G231700 Sobic003G341500--Sobic002G050300 Sobic003G341500--Sobic010G093300 Sobic003G319400 Sobic003G319400 Sobic003G020200--Sobic003G319400 Sobic010G148800 Sobic010G148800 Sobic003G020200--Sobic010G148800 Sobic004G306900 Sobic004G306900 Sobic003G020200--Sobic004G306900 Sobic006G003100 Sobic006G003100 Sobic003G020200--Sobic006G003100 Sobic001G438200 Sobic001G438200 Sobic003G020200--Sobic001G438200 Sobic006G174300 Sobic006G174300 Sobic003G020200--Sobic006G174300 Sobic006G079300 Sobic006G079300 Sobic003G020200--Sobic006G079300 Sobic010G152400 Sobic010G152400 Sobic003G020200--Sobic010G152400 Sobic010G031700 Sobic010G031700 Sobic003G020200--Sobic010G031700 Sobic002G050300--Sobic003G368100 Sobic002G050300--Sobic001G068500 Sobic002G050300--Sobic001G059600 Sobic002G050300--Sobic010G093300 Sobic002G050300--Sobic001G059500 Sobic002G053700 Sobic002G053700 Sobic002G050300--Sobic002G053700 Sobic001G379400 Sobic001G379400 Sobic002G050300--Sobic001G379400 Sobic005G160700 Sobic005G160700 Sobic002G050300--Sobic005G160700 Sobic002G050300--Sobic003G341500 Sobic003G053600--Sobic003G353200 Sobic005G063400 Sobic005G063400 Sobic003G053600--Sobic005G063400 Sobic003G053600--Sobic006G174300 Sobic003G053600--Sobic010G031700 Sobic006G277700 Sobic006G277700 Sobic003G053600--Sobic006G277700 Sobic002G146000 Sobic002G146000 Sobic003G053600--Sobic002G146000 Sobic007G057400 Sobic007G057400 Sobic003G053600--Sobic007G057400 Sobic005G206000 Sobic005G206000 Sobic003G053600--Sobic005G206000 Sobic008G164450 Sobic008G164450 Sobic003G053600--Sobic008G164450 Sobic010G093300--Sobic005G127200 Sobic010G093300--Sobic001G068500 Sobic010G093300--Sobic001G059600 Sobic010G093300--Sobic002G050300 Sobic001G413700 Sobic001G413700 Sobic010G093300--Sobic001G413700 Sobic006G224500 Sobic006G224500 Sobic010G093300--Sobic006G224500 Sobic010G093300--Sobic004G266700 Sobic010G093300--Sobic003G368100 Sobic009G006300 Sobic009G006300 Sobic010G093300--Sobic009G006300 Sobic007G037600 Sobic007G037600 Sobic003G353200--Sobic007G037600 Sobic003G353200--Sobic003G280000 Sobic003G353200--Sobic002G146000 Sobic003G353200--Sobic010G031700 Sobic005G202300 Sobic005G202300 Sobic003G353200--Sobic005G202300 Sobic003G353200--Sobic003G053600 Sobic006G106900 Sobic006G106900 Sobic003G353200--Sobic006G106900 Sobic001G218400 Sobic001G218400 Sobic003G353200--Sobic001G218400 Sobic003G353200--Sobic009G162300 Sobic003G280000--Sobic005G202300 Sobic003G280000--Sobic003G353200 Sobic003G280000--Sobic006G106900 Sobic003G280000--Sobic003G319400 Sobic003G280000--Sobic010G031700 Sobic003G053200 Sobic003G053200 Sobic003G280000--Sobic003G053200 Sobic003G257400 Sobic003G257400 Sobic003G280000--Sobic003G257400 Sobic009G181600 Sobic009G181600 Sobic003G280000--Sobic009G181600 Sobic003G280000--Sobic001G218400 Sobic009G162300--Sobic003G353200 Sobic009G162300--Sobic002G146000 Sobic009G162300--Sobic003G053600 Sobic003G183300 Sobic003G183300 Sobic009G162300--Sobic003G183300 Sobic005G166700 Sobic005G166700 Sobic009G162300--Sobic005G166700 Sobic009G162300--Sobic003G280000 Sobic009G162300--Sobic006G003100 Sobic009G162300--Sobic003G257400 Sobic004G047600 Sobic004G047600 Sobic009G162300--Sobic004G047600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.