Gene annotation
Transcriptome id Sobic.003G341500.1
Synonym LAC5, laccase gene, Sb03g038550, SbLAC6
Functional annotation lignin modification (PubMedID : 28529519)
laccase precursor protein, putative, expressed
UniProt C5XNW9
Pfam PF07731 PF00394 PF07732
Panther DB PTHR11709 PTHR11709:SF22
NCBI CDD -
KEGG Orthology K05909; laccase
Gene Ontology GO:0016491; oxidoreductase activity GO:0005507copper ion binding


Orthologs (automatic annotation)
TAIR AT2G40370 : laccase 5
RAP-DB (Rice) LOC_Os01g61160.1 : laccase precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a022105 , Zm00025a026896 , Zm00025a029611 , Zm00025a033285 , Zm00025a039744 , Zm00025a026840 , Zm00025a002044 , Zm00025a027016 , Zm00025a026839
Brachypodium KQJ92617 , KQJ93028 , KQJ90009 , KQK10391 , KQK22086 , KQJ87547
Barley HORVU4Hr1G055140.1 , HORVU4Hr1G055140.2 , HORVU5Hr1G047480.10 , HORVU7Hr1G083090.2 , HORVU7Hr1G083090.1 , HORVU3Hr1G088140.1 , HORVU3Hr1G088140.2 , HORVU4Hr1G055140.5 , HORVU4Hr1G055140.4 , HORVU7Hr1G083090.4 , HORVU3Hr1G088150.2 , HORVU3Hr1G088150.1 , HORVU7Hr1G083090.5 , HORVU7Hr1G083090.3 , HORVU5Hr1G047480.6 , HORVU5Hr1G047480.7 , HORVU5Hr1G047480.3 , HORVU5Hr1G047480.9
Wheat TraesCS5D02G156500 , TraesCS3A02G348000 , TraesCS3B02G379900 , TraesCS3D02G341600 , TraesCS5A02G151400 , TraesCS3A02G452400 , TraesCS5B02G149900 , TraesCS7D02G345000 , TraesCS5D02G031400 , TraesCS5A02G025000 , TraesCS6A02G304900 , TraesCS4D02G190900 , TraesCS4A02G114700 , TraesCS4B02G189500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G144800 LTPL72 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.001G068500 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
3 Sobic.004G266700 hydrolase, alpha/beta fold family domain containing protein, expressed -
4 Sobic.001G059600 LTPL99 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.003G368100 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
6 Sobic.005G127200 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.004G231700 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.002G050300 LTPL100 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.010G093300 GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.001G059500 LTPL74 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.009G008800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
12 Sobic.002G030575 - -
13 Sobic.002G030650 - -
14 Sobic.003G206700 heavy metal-associated domain containing protein, expressed -
15 Sobic.002G050100 LTPL100 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
16 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
17 Sobic.001G250100 thaumatin, putative, expressed -
18 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
19 Sobic.001G046800 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.006G160900 NAC domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G341500 Sobic003G341500 Sobic001G144800 Sobic001G144800 Sobic003G341500--Sobic001G144800 Sobic001G068500 Sobic001G068500 Sobic003G341500--Sobic001G068500 Sobic004G266700 Sobic004G266700 Sobic003G341500--Sobic004G266700 Sobic001G059600 Sobic001G059600 Sobic003G341500--Sobic001G059600 Sobic003G368100 Sobic003G368100 Sobic003G341500--Sobic003G368100 Sobic005G127200 Sobic005G127200 Sobic003G341500--Sobic005G127200 Sobic004G231700 Sobic004G231700 Sobic003G341500--Sobic004G231700 Sobic002G050300 Sobic002G050300 Sobic003G341500--Sobic002G050300 Sobic010G093300 Sobic010G093300 Sobic003G341500--Sobic010G093300 Sobic001G144800--Sobic003G341500 Sobic001G144800--Sobic004G266700 Sobic003G206700 Sobic003G206700 Sobic001G144800--Sobic003G206700 Sobic001G059500 Sobic001G059500 Sobic001G144800--Sobic001G059500 Sobic001G144800--Sobic001G068500 Sobic001G144800--Sobic003G368100 Sobic009G008800 Sobic009G008800 Sobic001G144800--Sobic009G008800 Sobic001G144800--Sobic001G059600 Sobic001G144800--Sobic005G127200 Sobic001G068500--Sobic003G368100 Sobic001G068500--Sobic003G341500 Sobic001G068500--Sobic002G050300 Sobic001G068500--Sobic005G127200 Sobic001G068500--Sobic010G093300 Sobic001G068500--Sobic004G266700 Sobic001G068500--Sobic001G059500 Sobic001G068500--Sobic001G059600 Sobic001G068500--Sobic001G144800 Sobic004G266700--Sobic005G127200 Sobic004G266700--Sobic003G341500 Sobic004G266700--Sobic001G144800 Sobic004G266700--Sobic001G068500 Sobic004G266700--Sobic010G093300 Sobic004G266700--Sobic009G008800 Sobic004G266700--Sobic003G368100 Sobic003G239100 Sobic003G239100 Sobic004G266700--Sobic003G239100 Sobic004G266700--Sobic001G059600 Sobic001G059600--Sobic003G368100 Sobic001G059600--Sobic010G093300 Sobic001G059600--Sobic004G231700 Sobic001G059600--Sobic003G341500 Sobic001G059600--Sobic002G050300 Sobic001G059600--Sobic001G068500 Sobic001G059600--Sobic005G127200 Sobic001G059600--Sobic001G059500 Sobic002G365801 Sobic002G365801 Sobic001G059600--Sobic002G365801 Sobic003G368100--Sobic001G068500 Sobic003G368100--Sobic002G050300 Sobic003G368100--Sobic001G059600 Sobic003G368100--Sobic001G059500 Sobic003G368100--Sobic003G341500 Sobic003G368100--Sobic002G365801 Sobic003G368100--Sobic001G144800 Sobic003G368100--Sobic010G093300 Sobic003G368100--Sobic005G127200 Sobic005G127200--Sobic010G093300 Sobic005G127200--Sobic004G266700 Sobic005G127200--Sobic001G068500 Sobic002G030800 Sobic002G030800 Sobic005G127200--Sobic002G030800 Sobic005G127200--Sobic003G341500 Sobic005G127200--Sobic001G059600 Sobic002G030650 Sobic002G030650 Sobic005G127200--Sobic002G030650 Sobic001G413700 Sobic001G413700 Sobic005G127200--Sobic001G413700 Sobic005G127200--Sobic003G368100 Sobic004G231700--Sobic001G059600 Sobic004G231700--Sobic003G341500 Sobic003G020200 Sobic003G020200 Sobic004G231700--Sobic003G020200 Sobic004G231700--Sobic002G050300 Sobic003G053600 Sobic003G053600 Sobic004G231700--Sobic003G053600 Sobic004G231700--Sobic010G093300 Sobic003G353200 Sobic003G353200 Sobic004G231700--Sobic003G353200 Sobic003G280000 Sobic003G280000 Sobic004G231700--Sobic003G280000 Sobic009G162300 Sobic009G162300 Sobic004G231700--Sobic009G162300 Sobic002G050300--Sobic003G368100 Sobic002G050300--Sobic001G068500 Sobic002G050300--Sobic001G059600 Sobic002G050300--Sobic010G093300 Sobic002G050300--Sobic001G059500 Sobic002G053700 Sobic002G053700 Sobic002G050300--Sobic002G053700 Sobic001G379400 Sobic001G379400 Sobic002G050300--Sobic001G379400 Sobic005G160700 Sobic005G160700 Sobic002G050300--Sobic005G160700 Sobic002G050300--Sobic003G341500 Sobic010G093300--Sobic005G127200 Sobic010G093300--Sobic001G068500 Sobic010G093300--Sobic001G059600 Sobic010G093300--Sobic002G050300 Sobic010G093300--Sobic001G413700 Sobic006G224500 Sobic006G224500 Sobic010G093300--Sobic006G224500 Sobic010G093300--Sobic004G266700 Sobic010G093300--Sobic003G368100 Sobic009G006300 Sobic009G006300 Sobic010G093300--Sobic009G006300
Octagon: transcription factors


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