Gene annotation
Transcriptome id Sobic.001G058300.1
Synonym Sb01g005300
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
uncharacterized protein At4g06744 precursor, putative, expressed
UniProt C5WX83
Pfam PF08263 PF13855
Panther DB PTHR32093 PTHR32093:SF33
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G22800 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os03g58110.1 : uncharacterized protein At4g06744 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a016581 , Zm00025a035770 , Zm00025a008549 , Zm00025a028597 , Zm00025a043105 , Zm00025a023166 , Zm00025a041768 , Zm00025a024511
Brachypodium KQK17443 , KQK07207 , KQK03023 , KQK04276 , KQJ93239 , KQK12721
Barley HORVU6Hr1G019290.3 , HORVU6Hr1G019290.6 , HORVU6Hr1G019290.5 , HORVU6Hr1G019290.4 , HORVU6Hr1G019290.2 , HORVU6Hr1G019290.1 , HORVU7Hr1G096310.2 , HORVU7Hr1G096310.3 , HORVU7Hr1G096310.1 , HORVU6Hr1G016710.2 , HORVU6Hr1G016710.1 , HORVU5Hr1G105060.1 , HORVU5Hr1G105060.3 , HORVU5Hr1G105060.2 , HORVU3Hr1G021700.2 , HORVU3Hr1G021700.1 , HORVU1Hr1G026650.2 , HORVU1Hr1G026650.3 , HORVU1Hr1G026650.1 , HORVU1Hr1G026650.6 , HORVU1Hr1G026650.4 , HORVU1Hr1G026650.5
Wheat TraesCS5A02G436000 , TraesCS5D02G443700 , TraesCS6B02G136600 , TraesCS5B02G439200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G238200 expansin precursor, putative, expressed -
2 Sobic.001G438200 expressed protein -
3 Sobic.003G140700 peroxidase precursor, putative, expressed -
4 Sobic.003G319400 receptor protein kinase, putative, expressed -
5 Sobic.004G306900 amino acid transporter, putative, expressed -
6 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
7 Sobic.003G282200 POEI44 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
8 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
9 Sobic.006G174300 cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase
10 Sobic.009G219200 expressed protein -
11 Sobic.009G199001 - -
12 Sobic.009G230900 expressed protein -
13 Sobic.002G255000 AIR12, putative, expressed -
14 Sobic.003G064800 dirigent, putative, expressed -
15 Sobic.007G050200 DNA binding protein, putative, expressed -
16 Sobic.004G322100 hypro1, putative, expressed -
17 Sobic.004G209400 carbonyl reductase 3, putative, expressed -
18 Sobic.007G100700 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
19 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -
20 Sobic.009G181600 indole-3-acetate beta-glucosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic001G058300 Sobic001G058300 Sobic001G238200 Sobic001G238200 Sobic001G058300--Sobic001G238200 Sobic001G438200 Sobic001G438200 Sobic001G058300--Sobic001G438200 Sobic003G140700 Sobic003G140700 Sobic001G058300--Sobic003G140700 Sobic003G319400 Sobic003G319400 Sobic001G058300--Sobic003G319400 Sobic004G306900 Sobic004G306900 Sobic001G058300--Sobic004G306900 Sobic005G202300 Sobic005G202300 Sobic001G058300--Sobic005G202300 Sobic003G282200 Sobic003G282200 Sobic001G058300--Sobic003G282200 Sobic006G106900 Sobic006G106900 Sobic001G058300--Sobic006G106900 Sobic006G174300 Sobic006G174300 Sobic001G058300--Sobic006G174300 Sobic003G064800 Sobic003G064800 Sobic001G238200--Sobic003G064800 Sobic001G238200--Sobic003G140700 Sobic002G255000 Sobic002G255000 Sobic001G238200--Sobic002G255000 Sobic001G238200--Sobic004G306900 Sobic001G238000 Sobic001G238000 Sobic001G238200--Sobic001G238000 Sobic010G234500 Sobic010G234500 Sobic001G238200--Sobic010G234500 Sobic001G238200--Sobic006G106900 Sobic001G238200--Sobic001G058300 Sobic004G323300 Sobic004G323300 Sobic001G238200--Sobic004G323300 Sobic001G438200--Sobic003G064800 Sobic001G438200--Sobic002G255000 Sobic001G438200--Sobic003G140700 Sobic001G438200--Sobic003G319400 Sobic009G219200 Sobic009G219200 Sobic001G438200--Sobic009G219200 Sobic001G438200--Sobic006G106900 Sobic001G438200--Sobic004G306900 Sobic006G273300 Sobic006G273300 Sobic001G438200--Sobic006G273300 Sobic004G322100 Sobic004G322100 Sobic001G438200--Sobic004G322100 Sobic003G140700--Sobic009G219200 Sobic003G140700--Sobic003G064800 Sobic006G225500 Sobic006G225500 Sobic003G140700--Sobic006G225500 Sobic003G140700--Sobic004G322100 Sobic003G140700--Sobic001G438200 Sobic003G140700--Sobic002G255000 Sobic003G140700--Sobic001G238200 Sobic005G127400 Sobic005G127400 Sobic003G140700--Sobic005G127400 Sobic004G110700 Sobic004G110700 Sobic003G140700--Sobic004G110700 Sobic003G319400--Sobic006G106900 Sobic003G319400--Sobic005G202300 Sobic003G319400--Sobic004G306900 Sobic003G319400--Sobic001G438200 Sobic009G181600 Sobic009G181600 Sobic003G319400--Sobic009G181600 Sobic007G086300 Sobic007G086300 Sobic003G319400--Sobic007G086300 Sobic003G319400--Sobic003G282200 Sobic003G319400--Sobic003G064800 Sobic003G280000 Sobic003G280000 Sobic003G319400--Sobic003G280000 Sobic006G028500 Sobic006G028500 Sobic004G306900--Sobic006G028500 Sobic004G306900--Sobic003G064800 Sobic004G306900--Sobic007G086300 Sobic003G000100 Sobic003G000100 Sobic004G306900--Sobic003G000100 Sobic004G106100 Sobic004G106100 Sobic004G306900--Sobic004G106100 Sobic006G019700 Sobic006G019700 Sobic004G306900--Sobic006G019700 Sobic004G306900--Sobic003G319400 Sobic010G152400 Sobic010G152400 Sobic004G306900--Sobic010G152400 Sobic004G306900--Sobic004G322100 Sobic005G202300--Sobic006G106900 Sobic005G202300--Sobic003G319400 Sobic005G202300--Sobic003G280000 Sobic005G202300--Sobic009G181600 Sobic003G053200 Sobic003G053200 Sobic005G202300--Sobic003G053200 Sobic010G031700 Sobic010G031700 Sobic005G202300--Sobic010G031700 Sobic003G353200 Sobic003G353200 Sobic005G202300--Sobic003G353200 Sobic004G029400 Sobic004G029400 Sobic005G202300--Sobic004G029400 Sobic005G202300--Sobic001G058300 Sobic009G065800 Sobic009G065800 Sobic003G282200--Sobic009G065800 Sobic003G282200--Sobic003G319400 Sobic003G282200--Sobic001G438200 Sobic003G282200--Sobic001G058300 Sobic003G282200--Sobic006G106900 Sobic003G282200--Sobic007G086300 Sobic003G282200--Sobic005G202300 Sobic003G282200--Sobic002G255000 Sobic003G282200--Sobic004G306900 Sobic006G106900--Sobic003G319400 Sobic006G106900--Sobic005G202300 Sobic006G106900--Sobic003G064800 Sobic001G414800 Sobic001G414800 Sobic006G106900--Sobic001G414800 Sobic006G106900--Sobic004G306900 Sobic001G507100 Sobic001G507100 Sobic006G106900--Sobic001G507100 Sobic006G106900--Sobic009G181600 Sobic006G106900--Sobic001G438200 Sobic006G106900--Sobic003G280000 Sobic006G277700 Sobic006G277700 Sobic006G174300--Sobic006G277700 Sobic006G174300--Sobic005G202300 Sobic006G174300--Sobic001G058300 Sobic003G053600 Sobic003G053600 Sobic006G174300--Sobic003G053600 Sobic006G174300--Sobic003G319400 Sobic006G174300--Sobic003G353200 Sobic006G174300--Sobic010G031700 Sobic001G379400 Sobic001G379400 Sobic006G174300--Sobic001G379400 Sobic002G377700 Sobic002G377700 Sobic006G174300--Sobic002G377700
Octagon: transcription factors


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