Gene annotation
Transcriptome id Sobic.004G071000.2,Sobic.004G071000.1
Synonym Sb04g005950, brown midrib6 , bmr6;CAD2;CAD2;SbCAD2;brown midrib, CAD4, CAD, CAD-C, bmr6;brown midrib-6, bmr;Cinnamyl alcohol dehydrogenase 2, Bmr6, ATCAD4, BMR-6;Brown midrib6, SbCAD2;brown midrib6
Functional annotation "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition" (PubMedID : 20585750)
the MYB transcription factor binding domain AACG element (PubMedID : 24045932)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues" (PubMedID : 28606901)
"cinnamyl alcohol dehydrogenase, CAD2" (PubMedID : 19087955)
Brown midrib6 Gene (PubMedID : 19087955)
cinnamyl alcohol dehydrogenase (PubMedID : 19363091)
a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)
"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1." (PubMedID : 9675900)
dehydrogenase, putative, expressed
UniProt H9LUK7 , A0A194YN40 , E9NM59 , H9LUK8 , A1ILL4
Pfam PF08240 PF00107 PF00107 PF08240
Panther DB PTHR11695 PTHR11695:SF574
NCBI CDD KOG0023; Alcohol dehydrogenase, class V
KEGG Orthology K00083; cinnamyl-alcohol dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G19450 : GroES-like zinc-binding alcohol dehydrogenase family protein
RAP-DB (Rice) LOC_Os02g09490.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a019357
Brachypodium KQJ93749 , PNT66058
Barley HORVU6Hr1G035420.2 , HORVU6Hr1G035420.3 , HORVU6Hr1G035420.1 , HORVU6Hr1G035420.6 , HORVU6Hr1G035420.4 , HORVU6Hr1G035420.5 , HORVU2Hr1G010830.1 , HORVU2Hr1G010830.2 , HORVU2Hr1G010830.3 , HORVU2Hr1G010830.4 , HORVU2Hr1G010830.5 , HORVU2Hr1G010830.6 , HORVU2Hr1G010830.7 , HORVU2Hr1G010840.1
Wheat TraesCS6D02G162800 , TraesCS6A02G173700 , TraesCS6B02G201600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G071000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G365801 - -
2 Sobic.002G365550 - -
3 Sobic.002G368300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@COBRA-like protein precursor, putative, expressed -
4 Sobic.002G365500 igA FC receptor precursor, putative, expressed -
5 Sobic.008G055100 dirigent, putative, expressed -
6 Sobic.010G115700 peroxidase precursor, putative, expressed K00430: peroxidase
7 Sobic.010G212500 - -
8 Sobic.002G365600 igA FC receptor precursor, putative, expressed -
9 Sobic.003G053400 hydrolase, alpha/beta fold family protein, putative, expressed -
10 Sobic.006G282300 - -
11 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
12 Sobic.010G096400 proteins of unknown function domain containing protein, expressed -
13 Sobic.009G088900 membrane associated DUF588 domain containing protein, putative, expressed -
14 Sobic.007G178900 CXE carboxylesterase, putative, expressed -
15 Sobic.002G154600 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
16 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
17 Sobic.002G261500 AIR12, putative, expressed -
18 Sobic.003G119500 expressed protein -
19 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
20 Sobic.009G109000 expressed protein -


Gene co-expression network
sample Sobic004G071000 Sobic004G071000 Sobic002G365801 Sobic002G365801 Sobic004G071000--Sobic002G365801 Sobic002G365550 Sobic002G365550 Sobic004G071000--Sobic002G365550 Sobic002G368300 Sobic002G368300 Sobic004G071000--Sobic002G368300 Sobic002G365500 Sobic002G365500 Sobic004G071000--Sobic002G365500 Sobic008G055100 Sobic008G055100 Sobic004G071000--Sobic008G055100 Sobic010G115700 Sobic010G115700 Sobic004G071000--Sobic010G115700 Sobic010G212500 Sobic010G212500 Sobic004G071000--Sobic010G212500 Sobic002G365600 Sobic002G365600 Sobic004G071000--Sobic002G365600 Sobic003G053400 Sobic003G053400 Sobic004G071000--Sobic003G053400 Sobic002G365801--Sobic002G365550 Sobic002G365801--Sobic004G071000 Sobic002G365801--Sobic010G115700 Sobic002G365801--Sobic010G212500 Sobic002G365801--Sobic002G368300 Sobic002G365801--Sobic002G365500 Sobic010G096400 Sobic010G096400 Sobic002G365801--Sobic010G096400 Sobic001G379400 Sobic001G379400 Sobic002G365801--Sobic001G379400 Sobic009G088900 Sobic009G088900 Sobic002G365801--Sobic009G088900 Sobic002G365550--Sobic002G365801 Sobic002G365550--Sobic002G365600 Sobic002G365550--Sobic002G365500 Sobic002G365550--Sobic004G071000 Sobic002G365550--Sobic010G115700 Sobic002G365550--Sobic010G212500 Sobic002G365550--Sobic010G096400 Sobic002G365550--Sobic002G368300 Sobic002G365550--Sobic003G053400 Sobic002G368300--Sobic002G365801 Sobic007G178900 Sobic007G178900 Sobic002G368300--Sobic007G178900 Sobic002G368300--Sobic004G071000 Sobic002G368300--Sobic002G365500 Sobic002G368300--Sobic002G365550 Sobic002G368300--Sobic010G096400 Sobic002G368300--Sobic009G088900 Sobic002G368300--Sobic010G212500 Sobic007G176000 Sobic007G176000 Sobic002G368300--Sobic007G176000 Sobic002G365500--Sobic002G365550 Sobic002G365500--Sobic002G365600 Sobic002G365500--Sobic010G115700 Sobic002G365500--Sobic002G365801 Sobic002G365500--Sobic004G071000 Sobic002G365500--Sobic002G368300 Sobic006G183900 Sobic006G183900 Sobic002G365500--Sobic006G183900 Sobic006G028400 Sobic006G028400 Sobic002G365500--Sobic006G028400 Sobic003G269500 Sobic003G269500 Sobic002G365500--Sobic003G269500 Sobic008G055100--Sobic009G088900 Sobic001G514200 Sobic001G514200 Sobic008G055100--Sobic001G514200 Sobic009G109000 Sobic009G109000 Sobic008G055100--Sobic009G109000 Sobic007G218800 Sobic007G218800 Sobic008G055100--Sobic007G218800 Sobic008G055100--Sobic010G096400 Sobic001G049900 Sobic001G049900 Sobic008G055100--Sobic001G049900 Sobic008G055100--Sobic007G176000 Sobic008G055100--Sobic007G178900 Sobic002G154600 Sobic002G154600 Sobic008G055100--Sobic002G154600 Sobic010G115700--Sobic002G365801 Sobic010G115700--Sobic002G365550 Sobic010G115700--Sobic002G365500 Sobic010G115700--Sobic004G071000 Sobic010G115700--Sobic010G096400 Sobic010G115700--Sobic002G365600 Sobic010G115700--Sobic002G368300 Sobic010G115700--Sobic007G178900 Sobic010G115700--Sobic009G088900 Sobic002G261500 Sobic002G261500 Sobic010G212500--Sobic002G261500 Sobic004G348800 Sobic004G348800 Sobic010G212500--Sobic004G348800 Sobic010G212500--Sobic002G365801 Sobic010G212500--Sobic002G365550 Sobic001G395800 Sobic001G395800 Sobic010G212500--Sobic001G395800 Sobic003G119500 Sobic003G119500 Sobic010G212500--Sobic003G119500 Sobic010G212500--Sobic003G053400 Sobic003G311800 Sobic003G311800 Sobic010G212500--Sobic003G311800 Sobic010G212500--Sobic009G109000 Sobic002G365600--Sobic002G365550 Sobic002G365600--Sobic003G269500 Sobic002G365600--Sobic002G365500 Sobic008G172500 Sobic008G172500 Sobic002G365600--Sobic008G172500 Sobic002G365600--Sobic006G183900 Sobic002G365600--Sobic004G071000 Sobic002G365600--Sobic002G365801 Sobic001G364400 Sobic001G364400 Sobic002G365600--Sobic001G364400 Sobic002G365600--Sobic010G212500 Sobic003G053400--Sobic002G261500 Sobic003G053400--Sobic009G088900 Sobic002G425000 Sobic002G425000 Sobic003G053400--Sobic002G425000 Sobic002G124500 Sobic002G124500 Sobic003G053400--Sobic002G124500 Sobic003G053400--Sobic009G109000 Sobic003G053400--Sobic010G212500 Sobic004G297900 Sobic004G297900 Sobic003G053400--Sobic004G297900 Sobic003G053400--Sobic002G365550 Sobic003G053400--Sobic002G365801
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.