Gene annotation
Transcriptome id Sobic.001G418100.2,Sobic.001G418100.1
Synonym Sb01g039350, UXS6
Functional annotation NAD dependent epimerase/dehydratase family domain containing protein, expressed
UniProt A0A1B6QP14
Pfam PF01073
Panther DB PTHR10366 PTHR10366:SF323
NCBI CDD -
KEGG Orthology K08678; UXS1, UDP-glucuronate decarboxylase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT2G28760 : UDP-XYL synthase 6
RAP-DB (Rice) LOC_Os03g16980.1 : NAD dependent epimerase/dehydratase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001873 , Zm00025a052744 , Zm00025a005469 , Zm00025a026947
Brachypodium KQK22315
Barley HORVU4Hr1G059130.12 , HORVU4Hr1G059130.11 , HORVU4Hr1G059130.8 , HORVU4Hr1G059130.4 , HORVU4Hr1G059130.5 , HORVU4Hr1G059130.6 , HORVU4Hr1G059130.7 , HORVU4Hr1G059130.1 , HORVU4Hr1G059130.3 , HORVU4Hr1G059130.9 , HORVU4Hr1G059130.2 , HORVU4Hr1G059130.10
Wheat TraesCS4B02G205200 , TraesCS4D02G206100 , TraesCS4A02G099100
Populus -


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cDNA sequences
Sobic.001G418100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G219800 transferase family protein, putative, expressed -
2 Sobic.005G112800 erythronate-4-phosphate dehydrogenase, putative, expressed K01251: E3.3.1.1, adenosylhomocysteinase
3 Sobic.002G396400 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed -
4 Sobic.009G181800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 9484480)@cytochrome P450, putative, expressed K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase
5 Sobic.002G154600 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
6 Sobic.001G514200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.002G128800 fiber protein Fb34, putative, expressed -
8 Sobic.001G475500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
9 Sobic.008G055100 dirigent, putative, expressed -
10 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
11 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
12 Sobic.001G038300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
13 Sobic.003G122200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
14 Sobic.006G282300 - -
15 Sobic.001G444800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
16 Sobic.003G410800 exostosin family domain containing protein, expressed -
17 Sobic.004G071000 "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
18 Sobic.001G361600 chaperonin, putative, expressed K04078: groES, chaperonin GroES
19 Sobic.003G119500 expressed protein -
20 Sobic.001G310300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic001G418100 Sobic001G418100 Sobic003G219800 Sobic003G219800 Sobic001G418100--Sobic003G219800 Sobic005G112800 Sobic005G112800 Sobic001G418100--Sobic005G112800 Sobic002G396400 Sobic002G396400 Sobic001G418100--Sobic002G396400 Sobic009G181800 Sobic009G181800 Sobic001G418100--Sobic009G181800 Sobic002G154600 Sobic002G154600 Sobic001G418100--Sobic002G154600 Sobic001G514200 Sobic001G514200 Sobic001G418100--Sobic001G514200 Sobic002G128800 Sobic002G128800 Sobic001G418100--Sobic002G128800 Sobic001G475500 Sobic001G475500 Sobic001G418100--Sobic001G475500 Sobic008G055100 Sobic008G055100 Sobic001G418100--Sobic008G055100 Sobic003G219800--Sobic001G418100 Sobic003G219800--Sobic009G181800 Sobic001G444800 Sobic001G444800 Sobic003G219800--Sobic001G444800 Sobic006G156000 Sobic006G156000 Sobic003G219800--Sobic006G156000 Sobic003G443300 Sobic003G443300 Sobic003G219800--Sobic003G443300 Sobic001G040100 Sobic001G040100 Sobic003G219800--Sobic001G040100 Sobic003G219800--Sobic005G112800 Sobic005G113300 Sobic005G113300 Sobic003G219800--Sobic005G113300 Sobic009G238900 Sobic009G238900 Sobic003G219800--Sobic009G238900 Sobic005G112800--Sobic001G418100 Sobic005G112800--Sobic001G444800 Sobic005G112800--Sobic001G040100 Sobic006G035900 Sobic006G035900 Sobic005G112800--Sobic006G035900 Sobic005G112800--Sobic003G219800 Sobic010G264300 Sobic010G264300 Sobic005G112800--Sobic010G264300 Sobic002G304900 Sobic002G304900 Sobic005G112800--Sobic002G304900 Sobic005G112800--Sobic003G443300 Sobic001G057300 Sobic001G057300 Sobic005G112800--Sobic001G057300 Sobic002G396400--Sobic001G418100 Sobic001G038300 Sobic001G038300 Sobic002G396400--Sobic001G038300 Sobic002G396400--Sobic001G475500 Sobic001G409100 Sobic001G409100 Sobic002G396400--Sobic001G409100 Sobic002G396400--Sobic002G128800 Sobic009G232100 Sobic009G232100 Sobic002G396400--Sobic009G232100 Sobic002G396400--Sobic002G154600 Sobic002G396400--Sobic009G181800 Sobic009G088900 Sobic009G088900 Sobic002G396400--Sobic009G088900 Sobic009G181800--Sobic001G418100 Sobic009G181800--Sobic003G219800 Sobic010G252401 Sobic010G252401 Sobic009G181800--Sobic010G252401 Sobic008G186100 Sobic008G186100 Sobic009G181800--Sobic008G186100 Sobic009G181800--Sobic005G113300 Sobic003G027400 Sobic003G027400 Sobic009G181800--Sobic003G027400 Sobic002G393400 Sobic002G393400 Sobic009G181800--Sobic002G393400 Sobic002G250000 Sobic002G250000 Sobic009G181800--Sobic002G250000 Sobic004G310200 Sobic004G310200 Sobic009G181800--Sobic004G310200 Sobic007G218800 Sobic007G218800 Sobic002G154600--Sobic007G218800 Sobic002G261500 Sobic002G261500 Sobic002G154600--Sobic002G261500 Sobic001G430100 Sobic001G430100 Sobic002G154600--Sobic001G430100 Sobic002G154600--Sobic009G088900 Sobic002G154600--Sobic008G055100 Sobic002G183700 Sobic002G183700 Sobic002G154600--Sobic002G183700 Sobic003G311800 Sobic003G311800 Sobic002G154600--Sobic003G311800 Sobic004G297900 Sobic004G297900 Sobic002G154600--Sobic004G297900 Sobic003G121100 Sobic003G121100 Sobic002G154600--Sobic003G121100 Sobic001G514200--Sobic008G055100 Sobic010G047600 Sobic010G047600 Sobic001G514200--Sobic010G047600 Sobic001G261460 Sobic001G261460 Sobic001G514200--Sobic001G261460 Sobic001G310300 Sobic001G310300 Sobic001G514200--Sobic001G310300 Sobic010G138300 Sobic010G138300 Sobic001G514200--Sobic010G138300 Sobic009G221800 Sobic009G221800 Sobic001G514200--Sobic009G221800 Sobic005G061200 Sobic005G061200 Sobic001G514200--Sobic005G061200 Sobic007G176000 Sobic007G176000 Sobic001G514200--Sobic007G176000 Sobic001G514200--Sobic002G154600 Sobic002G252000 Sobic002G252000 Sobic002G128800--Sobic002G252000 Sobic007G150800 Sobic007G150800 Sobic002G128800--Sobic007G150800 Sobic002G128800--Sobic001G418100 Sobic002G128800--Sobic002G396400 Sobic002G128800--Sobic001G475500 Sobic010G052200 Sobic010G052200 Sobic002G128800--Sobic010G052200 Sobic002G128800--Sobic006G156000 Sobic002G128800--Sobic003G219800 Sobic002G128800--Sobic003G443300 Sobic001G502900 Sobic001G502900 Sobic001G475500--Sobic001G502900 Sobic003G160700 Sobic003G160700 Sobic001G475500--Sobic003G160700 Sobic003G122200 Sobic003G122200 Sobic001G475500--Sobic003G122200 Sobic001G475500--Sobic005G113300 Sobic001G475500--Sobic007G150800 Sobic009G173500 Sobic009G173500 Sobic001G475500--Sobic009G173500 Sobic001G361600 Sobic001G361600 Sobic001G475500--Sobic001G361600 Sobic004G220000 Sobic004G220000 Sobic001G475500--Sobic004G220000 Sobic003G117500 Sobic003G117500 Sobic001G475500--Sobic003G117500 Sobic008G055100--Sobic009G088900 Sobic008G055100--Sobic001G514200 Sobic009G109000 Sobic009G109000 Sobic008G055100--Sobic009G109000 Sobic008G055100--Sobic007G218800 Sobic010G096400 Sobic010G096400 Sobic008G055100--Sobic010G096400 Sobic001G049900 Sobic001G049900 Sobic008G055100--Sobic001G049900 Sobic008G055100--Sobic007G176000 Sobic007G178900 Sobic007G178900 Sobic008G055100--Sobic007G178900 Sobic008G055100--Sobic002G154600
Octagon: transcription factors


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