Gene annotation
Transcriptome id Sobic.003G122200.1
Synonym ATARFA1E, ARFA1E, Sb03g010350
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
ADP-ribosylation factor, putative, expressed
UniProt A0A1W0VWX9
Pfam PF08477
Panther DB PTHR11711 PTHR11711:SF181
NCBI CDD KOG0070; GTP-binding ADP-ribosylation factor Arf1
KEGG Orthology K07937; ADP-ribosylation factor 1/2 K07977Arf/Sar family, other
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT3G62290 : ADP-ribosylation factor A1E
RAP-DB (Rice) LOC_Os07g12170.1 : ADP-ribosylation factor, putative, expressed
MaizeGDB (Corn) Zm00025a044059 , Zm00025a035278 , Zm00025a013401 , Zm00025a045417 , Zm00025a039804
Brachypodium PNT73921 , PNT73073 , KQK12518 , KQJ92478 , KQK20331 , KQK20330 , KQK20333 , KQK20332 , KQK20335 , KQK10268 , KQK10269
Barley HORVU1Hr1G068790.3 , HORVU1Hr1G068790.5 , HORVU1Hr1G068790.4 , HORVU1Hr1G068790.7 , HORVU1Hr1G068790.6 , HORVU5Hr1G111500.3 , HORVU5Hr1G111500.2 , HORVU5Hr1G111500.1 , HORVU5Hr1G111500.5 , HORVU5Hr1G111500.4 , HORVU3Hr1G079700.2 , HORVU3Hr1G079700.1 , HORVU3Hr1G079700.6 , HORVU3Hr1G079700.7 , HORVU3Hr1G079700.4 , HORVU3Hr1G079700.5 , HORVU3Hr1G079700.8 , HORVU0Hr1G027130.5 , HORVU0Hr1G027130.4 , HORVU0Hr1G027130.6 , HORVU0Hr1G027130.1 , HORVU0Hr1G027130.3 , HORVU0Hr1G027130.2 , HORVU1Hr1G068790.2 , HORVU2Hr1G054780.4 , HORVU2Hr1G054780.2 , HORVU2Hr1G054780.3 , HORVU2Hr1G054780.1 , HORVU1Hr1G068790.1
Wheat TraesCS3A02G337300 , TraesCS3A02G337300 , TraesCS1B02G317000 , TraesCS3D02G330500 , TraesCS3D02G330500 , TraesCS5A02G467400 , TraesCS1A02G306200 , TraesCS5D02G480200 , TraesCS5B02G479100 , TraesCS1D02G305900 , TraesCS3B02G368600
Populus PNT34324 , PNT34325


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G475500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
2 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
3 Sobic.007G150800 expressed protein -
4 Sobic.005G112800 erythronate-4-phosphate dehydrogenase, putative, expressed K01251: E3.3.1.1, adenosylhomocysteinase
5 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
6 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
7 Sobic.001G038300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
8 Sobic.004G055700 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
9 Sobic.001G040100 methylenetetrahydrofolate reductase, putative, expressed K00297: metF, methylenetetrahydrofolate reductase (NADPH)
10 Sobic.006G224000 proton-dependent oligopeptide transport, putative, expressed -
11 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
12 Sobic.001G347901 - -
13 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
14 Sobic.002G396400 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed -
15 Sobic.004G344500 tubulin-specific chaperone A, putative, expressed K17292: tubulin-specific chaperone A
16 Sobic.002G128800 fiber protein Fb34, putative, expressed -
17 Sobic.009G212200 expressed protein -
18 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
19 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
20 Sobic.006G278100 expressed protein -


Gene co-expression network
sample Sobic003G122200 Sobic003G122200 Sobic001G475500 Sobic001G475500 Sobic003G122200--Sobic001G475500 Sobic001G418100 Sobic001G418100 Sobic003G122200--Sobic001G418100 Sobic007G150800 Sobic007G150800 Sobic003G122200--Sobic007G150800 Sobic005G112800 Sobic005G112800 Sobic003G122200--Sobic005G112800 Sobic003G034600 Sobic003G034600 Sobic003G122200--Sobic003G034600 Sobic010G264300 Sobic010G264300 Sobic003G122200--Sobic010G264300 Sobic001G038300 Sobic001G038300 Sobic003G122200--Sobic001G038300 Sobic004G055700 Sobic004G055700 Sobic003G122200--Sobic004G055700 Sobic001G040100 Sobic001G040100 Sobic003G122200--Sobic001G040100 Sobic001G502900 Sobic001G502900 Sobic001G475500--Sobic001G502900 Sobic003G160700 Sobic003G160700 Sobic001G475500--Sobic003G160700 Sobic001G475500--Sobic003G122200 Sobic005G113300 Sobic005G113300 Sobic001G475500--Sobic005G113300 Sobic001G475500--Sobic007G150800 Sobic009G173500 Sobic009G173500 Sobic001G475500--Sobic009G173500 Sobic001G361600 Sobic001G361600 Sobic001G475500--Sobic001G361600 Sobic004G220000 Sobic004G220000 Sobic001G475500--Sobic004G220000 Sobic003G117500 Sobic003G117500 Sobic001G475500--Sobic003G117500 Sobic003G219800 Sobic003G219800 Sobic001G418100--Sobic003G219800 Sobic001G418100--Sobic005G112800 Sobic002G396400 Sobic002G396400 Sobic001G418100--Sobic002G396400 Sobic009G181800 Sobic009G181800 Sobic001G418100--Sobic009G181800 Sobic002G154600 Sobic002G154600 Sobic001G418100--Sobic002G154600 Sobic001G514200 Sobic001G514200 Sobic001G418100--Sobic001G514200 Sobic002G128800 Sobic002G128800 Sobic001G418100--Sobic002G128800 Sobic001G418100--Sobic001G475500 Sobic008G055100 Sobic008G055100 Sobic001G418100--Sobic008G055100 Sobic007G150800--Sobic001G475500 Sobic007G150800--Sobic002G128800 Sobic010G070500 Sobic010G070500 Sobic007G150800--Sobic010G070500 Sobic006G278100 Sobic006G278100 Sobic007G150800--Sobic006G278100 Sobic009G212200 Sobic009G212200 Sobic007G150800--Sobic009G212200 Sobic001G444800 Sobic001G444800 Sobic007G150800--Sobic001G444800 Sobic007G150800--Sobic003G122200 Sobic007G150800--Sobic009G173500 Sobic003G011100 Sobic003G011100 Sobic007G150800--Sobic003G011100 Sobic005G112800--Sobic001G418100 Sobic005G112800--Sobic001G444800 Sobic005G112800--Sobic001G040100 Sobic006G035900 Sobic006G035900 Sobic005G112800--Sobic006G035900 Sobic005G112800--Sobic003G219800 Sobic005G112800--Sobic010G264300 Sobic002G304900 Sobic002G304900 Sobic005G112800--Sobic002G304900 Sobic003G443300 Sobic003G443300 Sobic005G112800--Sobic003G443300 Sobic001G057300 Sobic001G057300 Sobic005G112800--Sobic001G057300 Sobic004G217450 Sobic004G217450 Sobic003G034600--Sobic004G217450 Sobic003G034600--Sobic003G122200 Sobic003G034600--Sobic001G475500 Sobic003G307400 Sobic003G307400 Sobic003G034600--Sobic003G307400 Sobic006G191800 Sobic006G191800 Sobic003G034600--Sobic006G191800 Sobic006G200000 Sobic006G200000 Sobic003G034600--Sobic006G200000 Sobic003G034600--Sobic003G160700 Sobic003G034600--Sobic009G173500 Sobic003G034600--Sobic007G150800 Sobic001G286200 Sobic001G286200 Sobic010G264300--Sobic001G286200 Sobic002G078300 Sobic002G078300 Sobic010G264300--Sobic002G078300 Sobic002G308300 Sobic002G308300 Sobic010G264300--Sobic002G308300 Sobic001G519000 Sobic001G519000 Sobic010G264300--Sobic001G519000 Sobic002G356400 Sobic002G356400 Sobic010G264300--Sobic002G356400 Sobic010G264300--Sobic009G212200 Sobic001G370700 Sobic001G370700 Sobic010G264300--Sobic001G370700 Sobic001G304400 Sobic001G304400 Sobic010G264300--Sobic001G304400 Sobic002G180300 Sobic002G180300 Sobic010G264300--Sobic002G180300 Sobic001G038300--Sobic002G396400 Sobic001G107100 Sobic001G107100 Sobic001G038300--Sobic001G107100 Sobic003G250700 Sobic003G250700 Sobic001G038300--Sobic003G250700 Sobic001G038300--Sobic001G418100 Sobic010G047600 Sobic010G047600 Sobic001G038300--Sobic010G047600 Sobic001G434300 Sobic001G434300 Sobic001G038300--Sobic001G434300 Sobic001G038300--Sobic001G475500 Sobic001G038300--Sobic007G150800 Sobic001G038300--Sobic003G122200 Sobic004G055700--Sobic005G113300 Sobic004G055700--Sobic003G160700 Sobic004G055700--Sobic001G361600 Sobic009G188000 Sobic009G188000 Sobic004G055700--Sobic009G188000 Sobic002G090300 Sobic002G090300 Sobic004G055700--Sobic002G090300 Sobic002G418400 Sobic002G418400 Sobic004G055700--Sobic002G418400 Sobic010G028200 Sobic010G028200 Sobic004G055700--Sobic010G028200 Sobic004G042000 Sobic004G042000 Sobic004G055700--Sobic004G042000 Sobic004G055700--Sobic004G220000 Sobic001G040100--Sobic005G112800 Sobic001G040100--Sobic003G219800 Sobic001G040100--Sobic002G356400 Sobic003G209000 Sobic003G209000 Sobic001G040100--Sobic003G209000 Sobic003G151600 Sobic003G151600 Sobic001G040100--Sobic003G151600 Sobic003G410500 Sobic003G410500 Sobic001G040100--Sobic003G410500 Sobic006G156000 Sobic006G156000 Sobic001G040100--Sobic006G156000 Sobic001G040100--Sobic002G418400 Sobic002G257300 Sobic002G257300 Sobic001G040100--Sobic002G257300
Octagon: transcription factors


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