Gene annotation
Transcriptome id Sobic.001G040100.1
Synonym MTHFR2, Sb01g003700
Functional annotation methylenetetrahydrofolate reductase, putative, expressed
UniProt C5WVY7
Pfam PF02219
Panther DB PTHR21091 PTHR21091:SF31
NCBI CDD -
KEGG Orthology K00297; metF, methylenetetrahydrofolate reductase (NADPH)
Gene Ontology GO:0006555; methionine metabolic process GO:0004489methylenetetrahydrofolate reductase (NAD(P)H) activity


Orthologs (automatic annotation)
TAIR AT2G44160 : methylenetetrahydrofolate reductase 2
RAP-DB (Rice) LOC_Os03g60090.1 : methylenetetrahydrofolate reductase, putative, expressed
MaizeGDB (Corn) Zm00025a008744
Brachypodium KQK12508
Barley HORVU6Hr1G011060.1 , HORVU6Hr1G011060.2 , HORVU5Hr1G111620.2 , HORVU5Hr1G111620.3 , HORVU5Hr1G111620.1 , HORVU5Hr1G111620.4 , HORVU5Hr1G111620.5
Wheat TraesCS5D02G481300 , TraesCS5B02G481000 , TraesCS5A02G468400
Populus -


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cDNA sequences
Sobic.001G040100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G112800 erythronate-4-phosphate dehydrogenase, putative, expressed K01251: E3.3.1.1, adenosylhomocysteinase
2 Sobic.003G219800 transferase family protein, putative, expressed -
3 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
4 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
5 Sobic.003G151600 S-adenosylmethionine synthetase, putative, expressed K00789: S-adenosylmethionine synthetase
6 Sobic.003G410500 transaldolase, putative, expressed K00616: E2.2.1.2, talA, transaldolase
7 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
8 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
9 Sobic.002G257300 ribulose-phosphate 3-epimerase, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
10 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
11 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
12 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
13 Sobic.004G220000 kinase, pfkB family, putative, expressed K00856: E2.7.1.20, adenosine kinase
14 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
15 Sobic.009G212200 expressed protein -
16 Sobic.003G050200 embryo-specific 3, putative, expressed -
17 Sobic.008G046900 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
18 Sobic.001G444800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
19 Sobic.008G132400 expressed protein -
20 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e


Gene co-expression network
sample Sobic001G040100 Sobic001G040100 Sobic005G112800 Sobic005G112800 Sobic001G040100--Sobic005G112800 Sobic003G219800 Sobic003G219800 Sobic001G040100--Sobic003G219800 Sobic002G356400 Sobic002G356400 Sobic001G040100--Sobic002G356400 Sobic003G209000 Sobic003G209000 Sobic001G040100--Sobic003G209000 Sobic003G151600 Sobic003G151600 Sobic001G040100--Sobic003G151600 Sobic003G410500 Sobic003G410500 Sobic001G040100--Sobic003G410500 Sobic006G156000 Sobic006G156000 Sobic001G040100--Sobic006G156000 Sobic002G418400 Sobic002G418400 Sobic001G040100--Sobic002G418400 Sobic002G257300 Sobic002G257300 Sobic001G040100--Sobic002G257300 Sobic001G418100 Sobic001G418100 Sobic005G112800--Sobic001G418100 Sobic001G444800 Sobic001G444800 Sobic005G112800--Sobic001G444800 Sobic005G112800--Sobic001G040100 Sobic006G035900 Sobic006G035900 Sobic005G112800--Sobic006G035900 Sobic005G112800--Sobic003G219800 Sobic010G264300 Sobic010G264300 Sobic005G112800--Sobic010G264300 Sobic002G304900 Sobic002G304900 Sobic005G112800--Sobic002G304900 Sobic003G443300 Sobic003G443300 Sobic005G112800--Sobic003G443300 Sobic001G057300 Sobic001G057300 Sobic005G112800--Sobic001G057300 Sobic003G219800--Sobic001G418100 Sobic009G181800 Sobic009G181800 Sobic003G219800--Sobic009G181800 Sobic003G219800--Sobic001G444800 Sobic003G219800--Sobic006G156000 Sobic003G219800--Sobic003G443300 Sobic003G219800--Sobic001G040100 Sobic003G219800--Sobic005G112800 Sobic005G113300 Sobic005G113300 Sobic003G219800--Sobic005G113300 Sobic009G238900 Sobic009G238900 Sobic003G219800--Sobic009G238900 Sobic002G309700 Sobic002G309700 Sobic002G356400--Sobic002G309700 Sobic001G465800 Sobic001G465800 Sobic002G356400--Sobic001G465800 Sobic009G119900 Sobic009G119900 Sobic002G356400--Sobic009G119900 Sobic001G350600 Sobic001G350600 Sobic002G356400--Sobic001G350600 Sobic004G170400 Sobic004G170400 Sobic002G356400--Sobic004G170400 Sobic004G260200 Sobic004G260200 Sobic002G356400--Sobic004G260200 Sobic001G404800 Sobic001G404800 Sobic002G356400--Sobic001G404800 Sobic004G259200 Sobic004G259200 Sobic002G356400--Sobic004G259200 Sobic002G356400--Sobic003G209000 Sobic003G209000--Sobic004G259200 Sobic003G209000--Sobic001G404800 Sobic003G209000--Sobic002G418400 Sobic001G018500 Sobic001G018500 Sobic003G209000--Sobic001G018500 Sobic006G083500 Sobic006G083500 Sobic003G209000--Sobic006G083500 Sobic003G215700 Sobic003G215700 Sobic003G209000--Sobic003G215700 Sobic007G051000 Sobic007G051000 Sobic003G209000--Sobic007G051000 Sobic003G209000--Sobic009G119900 Sobic002G398901 Sobic002G398901 Sobic003G209000--Sobic002G398901 Sobic003G151600--Sobic001G040100 Sobic003G151600--Sobic005G112800 Sobic010G101900 Sobic010G101900 Sobic003G151600--Sobic010G101900 Sobic004G257000 Sobic004G257000 Sobic003G151600--Sobic004G257000 Sobic001G058300 Sobic001G058300 Sobic003G151600--Sobic001G058300 Sobic009G074500 Sobic009G074500 Sobic003G151600--Sobic009G074500 Sobic003G151600--Sobic006G156000 Sobic003G389000 Sobic003G389000 Sobic003G151600--Sobic003G389000 Sobic003G151600--Sobic001G418100 Sobic003G410500--Sobic001G040100 Sobic003G410500--Sobic001G444800 Sobic004G138800 Sobic004G138800 Sobic003G410500--Sobic004G138800 Sobic003G410500--Sobic003G219800 Sobic003G410500--Sobic002G257300 Sobic001G304400 Sobic001G304400 Sobic003G410500--Sobic001G304400 Sobic003G363800 Sobic003G363800 Sobic003G410500--Sobic003G363800 Sobic009G212400 Sobic009G212400 Sobic003G410500--Sobic009G212400 Sobic003G410500--Sobic009G238900 Sobic006G156000--Sobic003G443300 Sobic001G432000 Sobic001G432000 Sobic006G156000--Sobic001G432000 Sobic005G168100 Sobic005G168100 Sobic006G156000--Sobic005G168100 Sobic006G156000--Sobic003G219800 Sobic001G084100 Sobic001G084100 Sobic006G156000--Sobic001G084100 Sobic006G156000--Sobic001G304400 Sobic009G212200 Sobic009G212200 Sobic006G156000--Sobic009G212200 Sobic002G361700 Sobic002G361700 Sobic006G156000--Sobic002G361700 Sobic006G156000--Sobic001G040100 Sobic002G418400--Sobic006G083500 Sobic002G418400--Sobic003G215700 Sobic002G418400--Sobic003G209000 Sobic002G418400--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic002G418400--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic002G418400--Sobic010G012500 Sobic001G047800 Sobic001G047800 Sobic002G418400--Sobic001G047800 Sobic002G418400--Sobic004G259200 Sobic002G418400--Sobic001G404800 Sobic002G257300--Sobic002G398901 Sobic001G418900 Sobic001G418900 Sobic002G257300--Sobic001G418900 Sobic002G190900 Sobic002G190900 Sobic002G257300--Sobic002G190900 Sobic002G257300--Sobic003G209000 Sobic004G051700 Sobic004G051700 Sobic002G257300--Sobic004G051700 Sobic010G239500 Sobic010G239500 Sobic002G257300--Sobic010G239500 Sobic002G257300--Sobic002G418400 Sobic002G257300--Sobic009G119900 Sobic002G257300--Sobic003G363800
Octagon: transcription factors


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