Gene annotation
Transcriptome id Sobic.003G151600.1,Sobic.003G151600.2
Synonym Sb03g013170, SAMS3, MTO3, MAT4
Functional annotation S-adenosylmethionine synthetase, putative, expressed
UniProt A0A1B6Q3B4
Pfam PF00438 PF02772 PF02773
Panther DB PTHR11964 PTHR11964:SF19
NCBI CDD -
KEGG Orthology K00789; S-adenosylmethionine synthetase
Gene Ontology GO:0006556; S-adenosylmethionine biosynthetic process GO:0004478methionine adenosyltransferase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT3G17390 : S-adenosylmethionine synthetase family protein
RAP-DB (Rice) LOC_Os01g22010.1,LOC_Os01g22010.4 : S-adenosylmethionine synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a038140 , Zm00025a036138 , Zm00025a055322 , Zm00025a024380
Brachypodium KQK04184 , KQK04025 , KQK04182 , KQK04183
Barley HORVU6Hr1G063490.1 , HORVU6Hr1G063490.2 , HORVU6Hr1G063490.3 , HORVU6Hr1G063490.4 , HORVU6Hr1G063490.5 , HORVU6Hr1G063540.4 , HORVU6Hr1G063540.5 , HORVU6Hr1G063540.2 , HORVU6Hr1G063570.2 , HORVU6Hr1G063570.1 , HORVU6Hr1G063540.1 , HORVU6Hr1G063540.3 , HORVU6Hr1G063560.1 , HORVU6Hr1G063560.2 , HORVU6Hr1G063560.3 , HORVU6Hr1G063560.4 , HORVU6Hr1G063560.5 , HORVU6Hr1G063560.6 , HORVU6Hr1G063560.7
Wheat TraesCS6D02G159100
Populus -


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cDNA sequences
Sobic.003G151600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G040100 methylenetetrahydrofolate reductase, putative, expressed K00297: metF, methylenetetrahydrofolate reductase (NADPH)
2 Sobic.005G112800 erythronate-4-phosphate dehydrogenase, putative, expressed K01251: E3.3.1.1, adenosylhomocysteinase
3 Sobic.010G101900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
4 Sobic.004G257000 transmembrane 9 superfamily member, putative, expressed -
5 Sobic.001G058300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein At4g06744 precursor, putative, expressed -
6 Sobic.009G074500 expressed protein -
7 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
8 Sobic.003G389000 Os1bglu4 - beta-glucosidase-like protein without signal sequence, expressed K01188: beta-glucosidase
9 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
10 Sobic.010G071400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.009G238900 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
12 Sobic.009G199001 - -
13 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
14 Sobic.005G061200 dirigent, putative, expressed -
15 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
16 Sobic.010G138300 DUF617 domain containing protein, expressed -
17 Sobic.009G221500 lipid phosphatase protein, putative, expressed -
18 Sobic.006G282300 - -
19 Sobic.006G035900 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
20 Sobic.003G219800 transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic003G151600 Sobic003G151600 Sobic001G040100 Sobic001G040100 Sobic003G151600--Sobic001G040100 Sobic005G112800 Sobic005G112800 Sobic003G151600--Sobic005G112800 Sobic010G101900 Sobic010G101900 Sobic003G151600--Sobic010G101900 Sobic004G257000 Sobic004G257000 Sobic003G151600--Sobic004G257000 Sobic001G058300 Sobic001G058300 Sobic003G151600--Sobic001G058300 Sobic009G074500 Sobic009G074500 Sobic003G151600--Sobic009G074500 Sobic006G156000 Sobic006G156000 Sobic003G151600--Sobic006G156000 Sobic003G389000 Sobic003G389000 Sobic003G151600--Sobic003G389000 Sobic001G418100 Sobic001G418100 Sobic003G151600--Sobic001G418100 Sobic001G040100--Sobic005G112800 Sobic003G219800 Sobic003G219800 Sobic001G040100--Sobic003G219800 Sobic002G356400 Sobic002G356400 Sobic001G040100--Sobic002G356400 Sobic003G209000 Sobic003G209000 Sobic001G040100--Sobic003G209000 Sobic001G040100--Sobic003G151600 Sobic003G410500 Sobic003G410500 Sobic001G040100--Sobic003G410500 Sobic001G040100--Sobic006G156000 Sobic002G418400 Sobic002G418400 Sobic001G040100--Sobic002G418400 Sobic002G257300 Sobic002G257300 Sobic001G040100--Sobic002G257300 Sobic005G112800--Sobic001G418100 Sobic001G444800 Sobic001G444800 Sobic005G112800--Sobic001G444800 Sobic005G112800--Sobic001G040100 Sobic006G035900 Sobic006G035900 Sobic005G112800--Sobic006G035900 Sobic005G112800--Sobic003G219800 Sobic010G264300 Sobic010G264300 Sobic005G112800--Sobic010G264300 Sobic002G304900 Sobic002G304900 Sobic005G112800--Sobic002G304900 Sobic003G443300 Sobic003G443300 Sobic005G112800--Sobic003G443300 Sobic001G057300 Sobic001G057300 Sobic005G112800--Sobic001G057300 Sobic004G111100 Sobic004G111100 Sobic010G101900--Sobic004G111100 Sobic007G047300 Sobic007G047300 Sobic010G101900--Sobic007G047300 Sobic006G282300 Sobic006G282300 Sobic010G101900--Sobic006G282300 Sobic010G101900--Sobic003G151600 Sobic002G252000 Sobic002G252000 Sobic010G101900--Sobic002G252000 Sobic004G071000 Sobic004G071000 Sobic010G101900--Sobic004G071000 Sobic010G069900 Sobic010G069900 Sobic010G101900--Sobic010G069900 Sobic003G227700 Sobic003G227700 Sobic010G101900--Sobic003G227700 Sobic009G215000 Sobic009G215000 Sobic010G101900--Sobic009G215000 Sobic001G217500 Sobic001G217500 Sobic004G257000--Sobic001G217500 Sobic004G257000--Sobic003G151600 Sobic004G257000--Sobic001G040100 Sobic002G101300 Sobic002G101300 Sobic004G257000--Sobic002G101300 Sobic001G031900 Sobic001G031900 Sobic004G257000--Sobic001G031900 Sobic010G253300 Sobic010G253300 Sobic004G257000--Sobic010G253300 Sobic004G257000--Sobic006G035900 Sobic003G348800 Sobic003G348800 Sobic004G257000--Sobic003G348800 Sobic004G257000--Sobic003G389000 Sobic001G238200 Sobic001G238200 Sobic001G058300--Sobic001G238200 Sobic001G438200 Sobic001G438200 Sobic001G058300--Sobic001G438200 Sobic003G140700 Sobic003G140700 Sobic001G058300--Sobic003G140700 Sobic003G319400 Sobic003G319400 Sobic001G058300--Sobic003G319400 Sobic004G306900 Sobic004G306900 Sobic001G058300--Sobic004G306900 Sobic005G202300 Sobic005G202300 Sobic001G058300--Sobic005G202300 Sobic003G282200 Sobic003G282200 Sobic001G058300--Sobic003G282200 Sobic006G106900 Sobic006G106900 Sobic001G058300--Sobic006G106900 Sobic006G174300 Sobic006G174300 Sobic001G058300--Sobic006G174300 Sobic004G322800 Sobic004G322800 Sobic009G074500--Sobic004G322800 Sobic009G199001 Sobic009G199001 Sobic009G074500--Sobic009G199001 Sobic002G042200 Sobic002G042200 Sobic009G074500--Sobic002G042200 Sobic010G148800 Sobic010G148800 Sobic009G074500--Sobic010G148800 Sobic004G209400 Sobic004G209400 Sobic009G074500--Sobic004G209400 Sobic009G221500 Sobic009G221500 Sobic009G074500--Sobic009G221500 Sobic003G020200 Sobic003G020200 Sobic009G074500--Sobic003G020200 Sobic009G074500--Sobic003G282200 Sobic010G138300 Sobic010G138300 Sobic009G074500--Sobic010G138300 Sobic006G156000--Sobic003G443300 Sobic001G432000 Sobic001G432000 Sobic006G156000--Sobic001G432000 Sobic005G168100 Sobic005G168100 Sobic006G156000--Sobic005G168100 Sobic006G156000--Sobic003G219800 Sobic001G084100 Sobic001G084100 Sobic006G156000--Sobic001G084100 Sobic001G304400 Sobic001G304400 Sobic006G156000--Sobic001G304400 Sobic009G212200 Sobic009G212200 Sobic006G156000--Sobic009G212200 Sobic002G361700 Sobic002G361700 Sobic006G156000--Sobic002G361700 Sobic006G156000--Sobic001G040100 Sobic002G101400 Sobic002G101400 Sobic003G389000--Sobic002G101400 Sobic010G113100 Sobic010G113100 Sobic003G389000--Sobic010G113100 Sobic003G203600 Sobic003G203600 Sobic003G389000--Sobic003G203600 Sobic002G216100 Sobic002G216100 Sobic003G389000--Sobic002G216100 Sobic001G067100 Sobic001G067100 Sobic003G389000--Sobic001G067100 Sobic002G185800 Sobic002G185800 Sobic003G389000--Sobic002G185800 Sobic006G092700 Sobic006G092700 Sobic003G389000--Sobic006G092700 Sobic007G057400 Sobic007G057400 Sobic003G389000--Sobic007G057400 Sobic007G073000 Sobic007G073000 Sobic003G389000--Sobic007G073000 Sobic001G418100--Sobic003G219800 Sobic001G418100--Sobic005G112800 Sobic002G396400 Sobic002G396400 Sobic001G418100--Sobic002G396400 Sobic009G181800 Sobic009G181800 Sobic001G418100--Sobic009G181800 Sobic002G154600 Sobic002G154600 Sobic001G418100--Sobic002G154600 Sobic001G514200 Sobic001G514200 Sobic001G418100--Sobic001G514200 Sobic002G128800 Sobic002G128800 Sobic001G418100--Sobic002G128800 Sobic001G475500 Sobic001G475500 Sobic001G418100--Sobic001G475500 Sobic008G055100 Sobic008G055100 Sobic001G418100--Sobic008G055100
Octagon: transcription factors


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