Gene annotation
Transcriptome id Sobic.009G238900.1,Sobic.009G238900.3
Synonym cICDH, Sb09g029110
Functional annotation dehydrogenase, putative, expressed
UniProt A0A1Z5R4I2 , A0A1Z5R408
Pfam PF00180
Panther DB PTHR11822
NCBI CDD -
KEGG Orthology K00031; IDH1, IDH2, isocitrate dehydrogenase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006102isocitrate metabolic process GO:0004450isocitrate dehydrogenase (NADP+) activity


Orthologs (automatic annotation)
TAIR AT1G65930 : cytosolic NADP+-dependent isocitrate dehydrogenase
RAP-DB (Rice) LOC_Os05g49760.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a038695 , Zm00025a044644 , Zm00025a028205
Brachypodium KQK09004 , PNT72521 , KQK03585 , KQK03584 , KQK03583 , KQK03582
Barley HORVU3Hr1G033920.16 , HORVU3Hr1G033920.17 , HORVU3Hr1G033920.14 , HORVU3Hr1G033920.15 , HORVU3Hr1G033920.12 , HORVU3Hr1G033920.13 , HORVU3Hr1G033920.10 , HORVU3Hr1G033920.11 , HORVU3Hr1G033920.18 , HORVU3Hr1G033920.19 , HORVU3Hr1G059060.6 , HORVU3Hr1G059060.1 , HORVU3Hr1G059060.3 , HORVU3Hr1G033920.4 , HORVU3Hr1G033920.5 , HORVU3Hr1G033920.6 , HORVU3Hr1G033920.7 , HORVU3Hr1G059060.5 , HORVU3Hr1G033920.1 , HORVU3Hr1G033920.2 , HORVU3Hr1G033920.3 , HORVU3Hr1G059060.9 , HORVU3Hr1G059060.8 , HORVU3Hr1G033920.8 , HORVU3Hr1G033920.9 , HORVU3Hr1G059060.4 , HORVU3Hr1G059060.11 , HORVU3Hr1G059060.7 , HORVU3Hr1G033920.27 , HORVU3Hr1G033920.26 , HORVU3Hr1G033920.25 , HORVU3Hr1G033920.24 , HORVU3Hr1G033920.23 , HORVU3Hr1G033920.22 , HORVU3Hr1G033920.21 , HORVU3Hr1G033920.20 , HORVU3Hr1G059060.10 , HORVU3Hr1G059060.2
Wheat TraesCS3B02G265700 , TraesCS3B02G199500 , TraesCS3D02G237500 , TraesCS3A02G237100 , TraesCS3D02G175100 , TraesCS3D02G175100
Populus PNT17149 , PNT23419 , PNT17150 , PNT17151 , PNT17152 , PNT23418


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cDNA sequences
Sobic.009G238900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G219800 transferase family protein, putative, expressed -
2 Sobic.001G444800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
3 Sobic.005G112800 erythronate-4-phosphate dehydrogenase, putative, expressed K01251: E3.3.1.1, adenosylhomocysteinase
4 Sobic.006G035900 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
5 Sobic.001G040100 methylenetetrahydrofolate reductase, putative, expressed K00297: metF, methylenetetrahydrofolate reductase (NADPH)
6 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
7 Sobic.002G361700 expressed protein -
8 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
9 Sobic.001G514200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.003G410500 transaldolase, putative, expressed K00616: E2.2.1.2, talA, transaldolase
11 Sobic.001G304400 expressed protein -
12 Sobic.008G128900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
13 Sobic.007G161400 Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
K13348: protein Mpv17
14 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
15 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
16 Sobic.007G157900 gibberellin receptor GID1L2, putative, expressed -
17 Sobic.001G261460 - -
18 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
19 Sobic.003G000200 AWPM-19-like membrane family protein, putative, expressed -
20 Sobic.010G047600 plant protein of unknown function domain containing protein, expressed -


Gene co-expression network
sample Sobic009G238900 Sobic009G238900 Sobic003G219800 Sobic003G219800 Sobic009G238900--Sobic003G219800 Sobic001G444800 Sobic001G444800 Sobic009G238900--Sobic001G444800 Sobic005G112800 Sobic005G112800 Sobic009G238900--Sobic005G112800 Sobic006G035900 Sobic006G035900 Sobic009G238900--Sobic006G035900 Sobic001G040100 Sobic001G040100 Sobic009G238900--Sobic001G040100 Sobic001G418100 Sobic001G418100 Sobic009G238900--Sobic001G418100 Sobic002G361700 Sobic002G361700 Sobic009G238900--Sobic002G361700 Sobic003G443300 Sobic003G443300 Sobic009G238900--Sobic003G443300 Sobic001G514200 Sobic001G514200 Sobic009G238900--Sobic001G514200 Sobic003G219800--Sobic001G418100 Sobic009G181800 Sobic009G181800 Sobic003G219800--Sobic009G181800 Sobic003G219800--Sobic001G444800 Sobic006G156000 Sobic006G156000 Sobic003G219800--Sobic006G156000 Sobic003G219800--Sobic003G443300 Sobic003G219800--Sobic001G040100 Sobic003G219800--Sobic005G112800 Sobic005G113300 Sobic005G113300 Sobic003G219800--Sobic005G113300 Sobic003G219800--Sobic009G238900 Sobic003G363800 Sobic003G363800 Sobic001G444800--Sobic003G363800 Sobic001G085400 Sobic001G085400 Sobic001G444800--Sobic001G085400 Sobic009G076400 Sobic009G076400 Sobic001G444800--Sobic009G076400 Sobic003G249700 Sobic003G249700 Sobic001G444800--Sobic003G249700 Sobic003G387900 Sobic003G387900 Sobic001G444800--Sobic003G387900 Sobic007G019400 Sobic007G019400 Sobic001G444800--Sobic007G019400 Sobic002G255300 Sobic002G255300 Sobic001G444800--Sobic002G255300 Sobic007G178600 Sobic007G178600 Sobic001G444800--Sobic007G178600 Sobic009G227400 Sobic009G227400 Sobic001G444800--Sobic009G227400 Sobic005G112800--Sobic001G418100 Sobic005G112800--Sobic001G444800 Sobic005G112800--Sobic001G040100 Sobic005G112800--Sobic006G035900 Sobic005G112800--Sobic003G219800 Sobic010G264300 Sobic010G264300 Sobic005G112800--Sobic010G264300 Sobic002G304900 Sobic002G304900 Sobic005G112800--Sobic002G304900 Sobic005G112800--Sobic003G443300 Sobic001G057300 Sobic001G057300 Sobic005G112800--Sobic001G057300 Sobic006G035900--Sobic001G057300 Sobic006G216600 Sobic006G216600 Sobic006G035900--Sobic006G216600 Sobic006G035900--Sobic005G112800 Sobic008G132400 Sobic008G132400 Sobic006G035900--Sobic008G132400 Sobic001G334300 Sobic001G334300 Sobic006G035900--Sobic001G334300 Sobic006G035900--Sobic002G304900 Sobic006G035900--Sobic010G264300 Sobic003G261100 Sobic003G261100 Sobic006G035900--Sobic003G261100 Sobic001G370700 Sobic001G370700 Sobic006G035900--Sobic001G370700 Sobic001G040100--Sobic005G112800 Sobic001G040100--Sobic003G219800 Sobic002G356400 Sobic002G356400 Sobic001G040100--Sobic002G356400 Sobic003G209000 Sobic003G209000 Sobic001G040100--Sobic003G209000 Sobic003G151600 Sobic003G151600 Sobic001G040100--Sobic003G151600 Sobic003G410500 Sobic003G410500 Sobic001G040100--Sobic003G410500 Sobic001G040100--Sobic006G156000 Sobic002G418400 Sobic002G418400 Sobic001G040100--Sobic002G418400 Sobic002G257300 Sobic002G257300 Sobic001G040100--Sobic002G257300 Sobic001G418100--Sobic003G219800 Sobic001G418100--Sobic005G112800 Sobic002G396400 Sobic002G396400 Sobic001G418100--Sobic002G396400 Sobic001G418100--Sobic009G181800 Sobic002G154600 Sobic002G154600 Sobic001G418100--Sobic002G154600 Sobic001G418100--Sobic001G514200 Sobic002G128800 Sobic002G128800 Sobic001G418100--Sobic002G128800 Sobic001G475500 Sobic001G475500 Sobic001G418100--Sobic001G475500 Sobic008G055100 Sobic008G055100 Sobic001G418100--Sobic008G055100 Sobic002G361700--Sobic006G156000 Sobic001G418900 Sobic001G418900 Sobic002G361700--Sobic001G418900 Sobic004G212300 Sobic004G212300 Sobic002G361700--Sobic004G212300 Sobic002G361700--Sobic002G257300 Sobic002G361700--Sobic003G443300 Sobic002G361700--Sobic009G238900 Sobic002G361700--Sobic003G219800 Sobic004G138800 Sobic004G138800 Sobic002G361700--Sobic004G138800 Sobic001G505500 Sobic001G505500 Sobic002G361700--Sobic001G505500 Sobic001G304400 Sobic001G304400 Sobic003G443300--Sobic001G304400 Sobic003G443300--Sobic001G418900 Sobic001G483100 Sobic001G483100 Sobic003G443300--Sobic001G483100 Sobic003G443300--Sobic001G085400 Sobic003G443300--Sobic006G216600 Sobic003G443300--Sobic006G156000 Sobic009G212200 Sobic009G212200 Sobic003G443300--Sobic009G212200 Sobic003G443300--Sobic003G249700 Sobic003G443300--Sobic003G219800 Sobic001G514200--Sobic008G055100 Sobic010G047600 Sobic010G047600 Sobic001G514200--Sobic010G047600 Sobic001G261460 Sobic001G261460 Sobic001G514200--Sobic001G261460 Sobic001G310300 Sobic001G310300 Sobic001G514200--Sobic001G310300 Sobic010G138300 Sobic010G138300 Sobic001G514200--Sobic010G138300 Sobic009G221800 Sobic009G221800 Sobic001G514200--Sobic009G221800 Sobic005G061200 Sobic005G061200 Sobic001G514200--Sobic005G061200 Sobic007G176000 Sobic007G176000 Sobic001G514200--Sobic007G176000 Sobic001G514200--Sobic002G154600
Octagon: transcription factors


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