Gene annotation
Transcriptome id Sobic.008G128900.1
Synonym NRPE9B, Sb08g018130, NRPB9B, NRPD9B
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
DNA-directed RNA polymerase II subunit RPB9, putative, expressed
UniProt C5YPS4
Pfam PF01096 PF02150
Panther DB PTHR11239 PTHR11239:SF15
NCBI CDD KOG2691; RNA polymerase II subunit 9
KEGG Orthology K03017; RPB9, DNA-directed RNA polymerase II subunit RPB9
Gene Ontology GO:0008270; zinc ion binding GO:0006351transcription, DNA-templated GO:0003676nucleic acid binding GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G16265 : RNA polymerases M/15 Kd subunit
RAP-DB (Rice) LOC_Os12g37370.1 : DNA-directed RNA polymerase II subunit RPB9, putative, expressed
MaizeGDB (Corn) Zm00025a025480
Brachypodium PNT78390 , KQJ86340
Barley HORVU4Hr1G088340.50 , HORVU4Hr1G088340.53 , HORVU4Hr1G088340.52 , HORVU4Hr1G088340.55 , HORVU4Hr1G088340.54 , HORVU4Hr1G088340.57 , HORVU5Hr1G023090.13 , HORVU5Hr1G023090.12 , HORVU5Hr1G023090.11 , HORVU5Hr1G023090.10 , HORVU4Hr1G088340.49 , HORVU5Hr1G023090.9 , HORVU5Hr1G023090.8 , HORVU5Hr1G023090.3 , HORVU5Hr1G023090.2 , HORVU5Hr1G023090.1 , HORVU5Hr1G023090.7 , HORVU5Hr1G023090.6 , HORVU5Hr1G023090.5 , HORVU5Hr1G023090.4
Wheat TraesCS5A02G089100 , TraesCS5A02G540000 , TraesCS5B02G095100 , TraesCS5D02G101200 , TraesCS4B02G374000
Populus -


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cDNA sequences
Sobic.008G128900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G312900 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
2 Sobic.007G161400 Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
K13348: protein Mpv17
3 Sobic.003G416300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.001G494000 Expressed in older stem(PubMedID : 28649278)@homeodomain protein, putative, expressed -
5 Sobic.005G043000 heat shock protein-related, putative, expressed -
6 Sobic.007G127100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
7 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
8 Sobic.010G195500 reductase, putative, expressed -
9 Sobic.003G280400 hexokinase, putative, expressed K00844: hexokinase
10 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
11 Sobic.006G059700 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
12 Sobic.009G130100 CHIT17 - Chitinase family protein precursor, expressed K01183: chitinase
13 Sobic.001G147900 cytochrome P450, putative, expressed -
14 Sobic.004G351500 - -
15 Sobic.002G257300 ribulose-phosphate 3-epimerase, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
16 Sobic.009G105700 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e
17 Sobic.003G366600 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
18 Sobic.009G238900 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
19 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
20 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e


Gene co-expression network
sample Sobic008G128900 Sobic008G128900 Sobic002G312900 Sobic002G312900 Sobic008G128900--Sobic002G312900 Sobic007G161400 Sobic007G161400 Sobic008G128900--Sobic007G161400 Sobic003G416300 Sobic003G416300 Sobic008G128900--Sobic003G416300 Sobic001G494000 Sobic001G494000 Sobic008G128900--Sobic001G494000 Sobic005G043000 Sobic005G043000 Sobic008G128900--Sobic005G043000 Sobic007G127100 Sobic007G127100 Sobic008G128900--Sobic007G127100 Sobic003G363800 Sobic003G363800 Sobic008G128900--Sobic003G363800 Sobic010G195500 Sobic010G195500 Sobic008G128900--Sobic010G195500 Sobic003G280400 Sobic003G280400 Sobic008G128900--Sobic003G280400 Sobic004G176600 Sobic004G176600 Sobic002G312900--Sobic004G176600 Sobic002G312900--Sobic008G128900 Sobic002G312900--Sobic010G195500 Sobic002G312900--Sobic005G043000 Sobic002G312900--Sobic003G416300 Sobic006G059700 Sobic006G059700 Sobic002G312900--Sobic006G059700 Sobic003G366600 Sobic003G366600 Sobic002G312900--Sobic003G366600 Sobic001G147900 Sobic001G147900 Sobic002G312900--Sobic001G147900 Sobic005G084600 Sobic005G084600 Sobic002G312900--Sobic005G084600 Sobic007G161400--Sobic003G280400 Sobic007G161400--Sobic008G128900 Sobic007G161400--Sobic006G059700 Sobic004G042000 Sobic004G042000 Sobic007G161400--Sobic004G042000 Sobic007G161400--Sobic005G043000 Sobic007G078100 Sobic007G078100 Sobic007G161400--Sobic007G078100 Sobic007G161400--Sobic002G312900 Sobic007G161400--Sobic003G363800 Sobic004G051700 Sobic004G051700 Sobic007G161400--Sobic004G051700 Sobic005G168800 Sobic005G168800 Sobic003G416300--Sobic005G168800 Sobic002G327300 Sobic002G327300 Sobic003G416300--Sobic002G327300 Sobic004G046200 Sobic004G046200 Sobic003G416300--Sobic004G046200 Sobic003G050200 Sobic003G050200 Sobic003G416300--Sobic003G050200 Sobic003G416300--Sobic002G312900 Sobic003G416300--Sobic007G127100 Sobic003G079400 Sobic003G079400 Sobic003G416300--Sobic003G079400 Sobic008G106700 Sobic008G106700 Sobic003G416300--Sobic008G106700 Sobic001G082600 Sobic001G082600 Sobic003G416300--Sobic001G082600 Sobic001G494000--Sobic008G106700 Sobic003G343900 Sobic003G343900 Sobic001G494000--Sobic003G343900 Sobic007G186100 Sobic007G186100 Sobic001G494000--Sobic007G186100 Sobic001G494000--Sobic004G046200 Sobic003G219800 Sobic003G219800 Sobic001G494000--Sobic003G219800 Sobic001G494000--Sobic010G195500 Sobic001G494000--Sobic003G079400 Sobic010G062100 Sobic010G062100 Sobic001G494000--Sobic010G062100 Sobic002G003800 Sobic002G003800 Sobic001G494000--Sobic002G003800 Sobic005G043000--Sobic002G312900 Sobic010G272300 Sobic010G272300 Sobic005G043000--Sobic010G272300 Sobic005G043000--Sobic006G059700 Sobic005G043000--Sobic007G161400 Sobic002G196100 Sobic002G196100 Sobic005G043000--Sobic002G196100 Sobic005G043000--Sobic001G147900 Sobic005G043000--Sobic001G082600 Sobic005G043000--Sobic008G128900 Sobic005G043000--Sobic003G366600 Sobic007G127100--Sobic003G416300 Sobic007G127100--Sobic002G327300 Sobic010G008400 Sobic010G008400 Sobic007G127100--Sobic010G008400 Sobic007G127100--Sobic008G128900 Sobic009G065300 Sobic009G065300 Sobic007G127100--Sobic009G065300 Sobic001G432700 Sobic001G432700 Sobic007G127100--Sobic001G432700 Sobic002G407100 Sobic002G407100 Sobic007G127100--Sobic002G407100 Sobic004G064400 Sobic004G064400 Sobic007G127100--Sobic004G064400 Sobic009G121900 Sobic009G121900 Sobic007G127100--Sobic009G121900 Sobic003G346600 Sobic003G346600 Sobic003G363800--Sobic003G346600 Sobic006G137100 Sobic006G137100 Sobic003G363800--Sobic006G137100 Sobic007G178600 Sobic007G178600 Sobic003G363800--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic003G363800--Sobic002G047600 Sobic003G387900 Sobic003G387900 Sobic003G363800--Sobic003G387900 Sobic009G076400 Sobic009G076400 Sobic003G363800--Sobic009G076400 Sobic001G085400 Sobic001G085400 Sobic003G363800--Sobic001G085400 Sobic004G331400 Sobic004G331400 Sobic003G363800--Sobic004G331400 Sobic006G216600 Sobic006G216600 Sobic003G363800--Sobic006G216600 Sobic005G093000 Sobic005G093000 Sobic010G195500--Sobic005G093000 Sobic010G195500--Sobic002G312900 Sobic002G329000 Sobic002G329000 Sobic010G195500--Sobic002G329000 Sobic010G268400 Sobic010G268400 Sobic010G195500--Sobic010G268400 Sobic010G195500--Sobic010G008400 Sobic010G195500--Sobic001G147900 Sobic004G062500 Sobic004G062500 Sobic010G195500--Sobic004G062500 Sobic010G239500 Sobic010G239500 Sobic010G195500--Sobic010G239500 Sobic004G101300 Sobic004G101300 Sobic010G195500--Sobic004G101300 Sobic003G280400--Sobic007G161400 Sobic003G280400--Sobic006G059700 Sobic010G110800 Sobic010G110800 Sobic003G280400--Sobic010G110800 Sobic007G204700 Sobic007G204700 Sobic003G280400--Sobic007G204700 Sobic003G280400--Sobic010G272300 Sobic001G264000 Sobic001G264000 Sobic003G280400--Sobic001G264000 Sobic005G065900 Sobic005G065900 Sobic003G280400--Sobic005G065900 Sobic006G197100 Sobic006G197100 Sobic003G280400--Sobic006G197100 Sobic006G256900 Sobic006G256900 Sobic003G280400--Sobic006G256900
Octagon: transcription factors


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