Gene annotation
Transcriptome id Sobic.002G257300.1
Synonym Sb02g029250
Functional annotation ribulose-phosphate 3-epimerase, putative, expressed
UniProt C5X4P9
Pfam PF00834
Panther DB PTHR11749
NCBI CDD KOG3111; D-ribulose-5-phosphate 3-epimerase
KEGG Orthology K01783; rpe, ribulose-phosphate 3-epimerase
Gene Ontology GO:0016857; racemase and epimerase activity, acting on carbohydrates and derivatives GO:0005975carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT3G01850 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os09g32810.2 : ribulose-phosphate 3-epimerase, putative, expressed
MaizeGDB (Corn) Zm00025a047570
Brachypodium KQJ90920 , KQJ90921
Barley HORVU5Hr1G076140.3 , HORVU5Hr1G076140.2 , HORVU5Hr1G076140.1 , HORVU5Hr1G076140.7 , HORVU5Hr1G076140.6 , HORVU5Hr1G076140.5 , HORVU5Hr1G076140.4 , HORVU5Hr1G076140.8
Wheat TraesCS5B02G284600 , TraesCS5D02G292800 , TraesCS5A02G285400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G398901 - -
2 Sobic.001G418900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.002G190900 expressed protein -
4 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
5 Sobic.004G051700 OTU-like cysteine protease family protein, putative, expressed K13719: OTU1, ubiquitin thioesterase OTU1
6 Sobic.010G239500 ubiquitin family protein, putative, expressed K08770: ubiquitin C
7 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
8 Sobic.009G119900 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
9 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
10 Sobic.010G012500 ATOZI1, putative, expressed -
11 Sobic.004G220000 kinase, pfkB family, putative, expressed K00856: E2.7.1.20, adenosine kinase
12 Sobic.004G211833 - K02267: cytochrome c oxidase subunit 6b
13 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
14 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
15 Sobic.007G078100 UPF0041 domain containing protein, putative, expressed -
16 Sobic.004G259200 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
17 Sobic.004G101300 expressed protein -
18 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
19 Sobic.001G040100 methylenetetrahydrofolate reductase, putative, expressed K00297: metF, methylenetetrahydrofolate reductase (NADPH)
20 Sobic.006G083500 SLL1 protein, putative, expressed -


Gene co-expression network
sample Sobic002G257300 Sobic002G257300 Sobic002G398901 Sobic002G398901 Sobic002G257300--Sobic002G398901 Sobic001G418900 Sobic001G418900 Sobic002G257300--Sobic001G418900 Sobic002G190900 Sobic002G190900 Sobic002G257300--Sobic002G190900 Sobic003G209000 Sobic003G209000 Sobic002G257300--Sobic003G209000 Sobic004G051700 Sobic004G051700 Sobic002G257300--Sobic004G051700 Sobic010G239500 Sobic010G239500 Sobic002G257300--Sobic010G239500 Sobic002G418400 Sobic002G418400 Sobic002G257300--Sobic002G418400 Sobic009G119900 Sobic009G119900 Sobic002G257300--Sobic009G119900 Sobic003G363800 Sobic003G363800 Sobic002G257300--Sobic003G363800 Sobic002G398901--Sobic002G190900 Sobic010G012500 Sobic010G012500 Sobic002G398901--Sobic010G012500 Sobic009G176000 Sobic009G176000 Sobic002G398901--Sobic009G176000 Sobic007G051000 Sobic007G051000 Sobic002G398901--Sobic007G051000 Sobic004G211833 Sobic004G211833 Sobic002G398901--Sobic004G211833 Sobic002G081600 Sobic002G081600 Sobic002G398901--Sobic002G081600 Sobic002G398901--Sobic002G418400 Sobic006G083500 Sobic006G083500 Sobic002G398901--Sobic006G083500 Sobic009G215200 Sobic009G215200 Sobic002G398901--Sobic009G215200 Sobic007G115100 Sobic007G115100 Sobic001G418900--Sobic007G115100 Sobic003G443300 Sobic003G443300 Sobic001G418900--Sobic003G443300 Sobic004G138800 Sobic004G138800 Sobic001G418900--Sobic004G138800 Sobic004G310300 Sobic004G310300 Sobic001G418900--Sobic004G310300 Sobic001G418900--Sobic002G257300 Sobic001G418900--Sobic009G119900 Sobic003G155400 Sobic003G155400 Sobic001G418900--Sobic003G155400 Sobic005G188100 Sobic005G188100 Sobic001G418900--Sobic005G188100 Sobic005G110800 Sobic005G110800 Sobic001G418900--Sobic005G110800 Sobic002G190900--Sobic002G398901 Sobic002G190900--Sobic010G012500 Sobic002G190900--Sobic007G051000 Sobic002G190900--Sobic009G176000 Sobic002G190900--Sobic002G081600 Sobic002G190900--Sobic005G188100 Sobic001G281400 Sobic001G281400 Sobic002G190900--Sobic001G281400 Sobic002G190900--Sobic004G211833 Sobic001G374700 Sobic001G374700 Sobic002G190900--Sobic001G374700 Sobic004G259200 Sobic004G259200 Sobic003G209000--Sobic004G259200 Sobic001G404800 Sobic001G404800 Sobic003G209000--Sobic001G404800 Sobic003G209000--Sobic002G418400 Sobic001G018500 Sobic001G018500 Sobic003G209000--Sobic001G018500 Sobic003G209000--Sobic006G083500 Sobic003G215700 Sobic003G215700 Sobic003G209000--Sobic003G215700 Sobic003G209000--Sobic007G051000 Sobic003G209000--Sobic009G119900 Sobic003G209000--Sobic002G398901 Sobic004G051700--Sobic010G012500 Sobic004G051700--Sobic002G190900 Sobic001G048832 Sobic001G048832 Sobic004G051700--Sobic001G048832 Sobic004G051700--Sobic007G051000 Sobic004G051700--Sobic004G211833 Sobic004G051700--Sobic002G398901 Sobic004G051700--Sobic002G257300 Sobic002G175100 Sobic002G175100 Sobic004G051700--Sobic002G175100 Sobic010G204500 Sobic010G204500 Sobic004G051700--Sobic010G204500 Sobic010G239500--Sobic002G175100 Sobic010G239500--Sobic002G081600 Sobic010G239500--Sobic001G374700 Sobic010G239500--Sobic002G398901 Sobic006G213000 Sobic006G213000 Sobic010G239500--Sobic006G213000 Sobic001G481400 Sobic001G481400 Sobic010G239500--Sobic001G481400 Sobic006G137100 Sobic006G137100 Sobic010G239500--Sobic006G137100 Sobic009G240600 Sobic009G240600 Sobic010G239500--Sobic009G240600 Sobic006G116700 Sobic006G116700 Sobic010G239500--Sobic006G116700 Sobic002G418400--Sobic006G083500 Sobic002G418400--Sobic003G215700 Sobic002G418400--Sobic003G209000 Sobic002G418400--Sobic002G398901 Sobic002G418400--Sobic004G211833 Sobic002G418400--Sobic010G012500 Sobic001G047800 Sobic001G047800 Sobic002G418400--Sobic001G047800 Sobic002G418400--Sobic004G259200 Sobic002G418400--Sobic001G404800 Sobic002G356400 Sobic002G356400 Sobic009G119900--Sobic002G356400 Sobic009G119900--Sobic003G209000 Sobic009G119900--Sobic004G310300 Sobic004G170400 Sobic004G170400 Sobic009G119900--Sobic004G170400 Sobic009G119900--Sobic004G259200 Sobic009G119900--Sobic007G051000 Sobic001G172000 Sobic001G172000 Sobic009G119900--Sobic001G172000 Sobic009G119900--Sobic006G083500 Sobic010G154700 Sobic010G154700 Sobic009G119900--Sobic010G154700 Sobic003G346600 Sobic003G346600 Sobic003G363800--Sobic003G346600 Sobic003G363800--Sobic006G137100 Sobic007G178600 Sobic007G178600 Sobic003G363800--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic003G363800--Sobic002G047600 Sobic003G387900 Sobic003G387900 Sobic003G363800--Sobic003G387900 Sobic009G076400 Sobic009G076400 Sobic003G363800--Sobic009G076400 Sobic001G085400 Sobic001G085400 Sobic003G363800--Sobic001G085400 Sobic004G331400 Sobic004G331400 Sobic003G363800--Sobic004G331400 Sobic006G216600 Sobic006G216600 Sobic003G363800--Sobic006G216600
Octagon: transcription factors


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