Gene annotation
Transcriptome id Sobic.004G051700.1
Synonym Sb04g004420
Functional annotation OTU-like cysteine protease family protein, putative, expressed
UniProt C5XVH7
Pfam PF02338
Panther DB PTHR13312
NCBI CDD -
KEGG Orthology K13719; OTU1, ubiquitin thioesterase OTU1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G50670 : OTU-like cysteine protease family protein
RAP-DB (Rice) LOC_Os02g06890.1 : OTU-like cysteine protease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a034818
Brachypodium -
Barley HORVU5Hr1G101740.1 , HORVU5Hr1G101740.2 , HORVU5Hr1G101740.3
Wheat -
Populus -


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cDNA sequences
Sobic.004G051700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G012500 ATOZI1, putative, expressed -
2 Sobic.002G190900 expressed protein -
3 Sobic.001G048832 - -
4 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
5 Sobic.004G211833 - K02267: cytochrome c oxidase subunit 6b
6 Sobic.002G398901 - -
7 Sobic.002G257300 ribulose-phosphate 3-epimerase, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
8 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
9 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
10 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
11 Sobic.010G239500 ubiquitin family protein, putative, expressed K08770: ubiquitin C
12 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
13 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
14 Sobic.005G188100 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
15 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
16 Sobic.004G220000 kinase, pfkB family, putative, expressed K00856: E2.7.1.20, adenosine kinase
17 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
18 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
19 Sobic.006G083500 SLL1 protein, putative, expressed -
20 Sobic.002G375100 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe


Gene co-expression network
sample Sobic004G051700 Sobic004G051700 Sobic010G012500 Sobic010G012500 Sobic004G051700--Sobic010G012500 Sobic002G190900 Sobic002G190900 Sobic004G051700--Sobic002G190900 Sobic001G048832 Sobic001G048832 Sobic004G051700--Sobic001G048832 Sobic007G051000 Sobic007G051000 Sobic004G051700--Sobic007G051000 Sobic004G211833 Sobic004G211833 Sobic004G051700--Sobic004G211833 Sobic002G398901 Sobic002G398901 Sobic004G051700--Sobic002G398901 Sobic002G257300 Sobic002G257300 Sobic004G051700--Sobic002G257300 Sobic002G175100 Sobic002G175100 Sobic004G051700--Sobic002G175100 Sobic010G204500 Sobic010G204500 Sobic004G051700--Sobic010G204500 Sobic010G012500--Sobic004G211833 Sobic010G012500--Sobic002G398901 Sobic006G083500 Sobic006G083500 Sobic010G012500--Sobic006G083500 Sobic010G012500--Sobic007G051000 Sobic010G012500--Sobic002G190900 Sobic004G220000 Sobic004G220000 Sobic010G012500--Sobic004G220000 Sobic009G176000 Sobic009G176000 Sobic010G012500--Sobic009G176000 Sobic002G375100 Sobic002G375100 Sobic010G012500--Sobic002G375100 Sobic002G418400 Sobic002G418400 Sobic010G012500--Sobic002G418400 Sobic002G190900--Sobic002G398901 Sobic002G190900--Sobic010G012500 Sobic002G190900--Sobic007G051000 Sobic002G190900--Sobic009G176000 Sobic002G081600 Sobic002G081600 Sobic002G190900--Sobic002G081600 Sobic005G188100 Sobic005G188100 Sobic002G190900--Sobic005G188100 Sobic001G281400 Sobic001G281400 Sobic002G190900--Sobic001G281400 Sobic002G190900--Sobic004G211833 Sobic001G374700 Sobic001G374700 Sobic002G190900--Sobic001G374700 Sobic010G154700 Sobic010G154700 Sobic001G048832--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic001G048832--Sobic001G132100 Sobic001G048832--Sobic007G051000 Sobic001G048832--Sobic009G176000 Sobic001G048832--Sobic005G188100 Sobic001G048832--Sobic002G190900 Sobic009G119900 Sobic009G119900 Sobic001G048832--Sobic009G119900 Sobic004G272800 Sobic004G272800 Sobic001G048832--Sobic004G272800 Sobic001G048832--Sobic002G398901 Sobic007G051000--Sobic010G012500 Sobic007G051000--Sobic009G176000 Sobic007G051000--Sobic002G398901 Sobic007G051000--Sobic004G211833 Sobic007G051000--Sobic002G190900 Sobic007G051000--Sobic006G083500 Sobic001G018500 Sobic001G018500 Sobic007G051000--Sobic001G018500 Sobic003G209000 Sobic003G209000 Sobic007G051000--Sobic003G209000 Sobic007G051000--Sobic010G204500 Sobic004G211833--Sobic010G012500 Sobic004G211833--Sobic006G083500 Sobic004G211833--Sobic002G398901 Sobic004G211833--Sobic004G220000 Sobic004G211833--Sobic007G051000 Sobic004G211833--Sobic009G176000 Sobic004G211833--Sobic002G418400 Sobic004G211833--Sobic002G190900 Sobic003G215700 Sobic003G215700 Sobic004G211833--Sobic003G215700 Sobic002G398901--Sobic002G190900 Sobic002G398901--Sobic010G012500 Sobic002G398901--Sobic009G176000 Sobic002G398901--Sobic007G051000 Sobic002G398901--Sobic004G211833 Sobic002G398901--Sobic002G081600 Sobic002G398901--Sobic002G418400 Sobic002G398901--Sobic006G083500 Sobic009G215200 Sobic009G215200 Sobic002G398901--Sobic009G215200 Sobic002G257300--Sobic002G398901 Sobic001G418900 Sobic001G418900 Sobic002G257300--Sobic001G418900 Sobic002G257300--Sobic002G190900 Sobic002G257300--Sobic003G209000 Sobic002G257300--Sobic004G051700 Sobic010G239500 Sobic010G239500 Sobic002G257300--Sobic010G239500 Sobic002G257300--Sobic002G418400 Sobic002G257300--Sobic009G119900 Sobic003G363800 Sobic003G363800 Sobic002G257300--Sobic003G363800 Sobic004G331400 Sobic004G331400 Sobic002G175100--Sobic004G331400 Sobic002G175100--Sobic001G374700 Sobic002G175100--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic002G175100--Sobic006G116700 Sobic001G091801 Sobic001G091801 Sobic002G175100--Sobic001G091801 Sobic006G047400 Sobic006G047400 Sobic002G175100--Sobic006G047400 Sobic009G050300 Sobic009G050300 Sobic002G175100--Sobic009G050300 Sobic002G175100--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic002G175100--Sobic003G346600 Sobic001G403500 Sobic001G403500 Sobic010G204500--Sobic001G403500 Sobic001G483100 Sobic001G483100 Sobic010G204500--Sobic001G483100 Sobic001G016400 Sobic001G016400 Sobic010G204500--Sobic001G016400 Sobic010G204500--Sobic009G050300 Sobic009G180000 Sobic009G180000 Sobic010G204500--Sobic009G180000 Sobic002G056200 Sobic002G056200 Sobic010G204500--Sobic002G056200 Sobic010G204500--Sobic002G081600 Sobic010G204500--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic010G204500--Sobic001G018900
Octagon: transcription factors


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