Gene annotation
Transcriptome id Sobic.004G101300.1
Synonym Sb04g008280
Functional annotation expressed protein
UniProt C5XYK1
Pfam -
Panther DB PTHR35128 PTHR35128:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G58800 : -
RAP-DB (Rice) LOC_Os02g13650.1 : expressed protein
MaizeGDB (Corn) Zm00025a034491
Brachypodium PNT66220
Barley HORVU3Hr1G019980.10 , HORVU3Hr1G019980.11 , HORVU3Hr1G019980.12 , HORVU3Hr1G019980.6 , HORVU3Hr1G019980.8 , HORVU3Hr1G019980.9 , HORVU3Hr1G019980.7 , HORVU3Hr1G019980.4 , HORVU3Hr1G019980.5 , HORVU3Hr1G019980.2 , HORVU3Hr1G019980.3 , HORVU3Hr1G019980.1
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
2 Sobic.002G190900 expressed protein -
3 Sobic.007G087200 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
4 Sobic.003G192100 expressed protein -
5 Sobic.010G259600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
6 Sobic.004G340900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX70 - F-box domain containing protein, expressed -
7 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
8 Sobic.009G111000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed K01051: pectinesterase
9 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
10 Sobic.002G017800 expressed protein -
11 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -
12 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
13 Sobic.001G481400 similar to AP2 domain containing protein(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@similar to AP2 domain containing protein(PubMedID : 24655390)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
14 Sobic.006G092500 expressed protein -
15 Sobic.009G077800 expressed protein -
16 Sobic.007G155000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
17 Sobic.004G061200 expressed protein -
18 Sobic.003G352300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
19 Sobic.003G037800 transferase family protein, putative, expressed -
20 Sobic.001G231700 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase


Gene co-expression network
sample Sobic004G101300 Sobic004G101300 Sobic001G389000 Sobic001G389000 Sobic004G101300--Sobic001G389000 Sobic002G190900 Sobic002G190900 Sobic004G101300--Sobic002G190900 Sobic007G087200 Sobic007G087200 Sobic004G101300--Sobic007G087200 Sobic003G192100 Sobic003G192100 Sobic004G101300--Sobic003G192100 Sobic010G259600 Sobic010G259600 Sobic004G101300--Sobic010G259600 Sobic004G340900 Sobic004G340900 Sobic004G101300--Sobic004G340900 Sobic005G018700 Sobic005G018700 Sobic004G101300--Sobic005G018700 Sobic009G111000 Sobic009G111000 Sobic004G101300--Sobic009G111000 Sobic009G159400 Sobic009G159400 Sobic004G101300--Sobic009G159400 Sobic001G389000--Sobic009G159400 Sobic003G037800 Sobic003G037800 Sobic001G389000--Sobic003G037800 Sobic001G389000--Sobic004G101300 Sobic001G389000--Sobic004G340900 Sobic001G389000--Sobic010G259600 Sobic006G092500 Sobic006G092500 Sobic001G389000--Sobic006G092500 Sobic001G139100 Sobic001G139100 Sobic001G389000--Sobic001G139100 Sobic001G038900 Sobic001G038900 Sobic001G389000--Sobic001G038900 Sobic003G429000 Sobic003G429000 Sobic001G389000--Sobic003G429000 Sobic002G398901 Sobic002G398901 Sobic002G190900--Sobic002G398901 Sobic010G012500 Sobic010G012500 Sobic002G190900--Sobic010G012500 Sobic007G051000 Sobic007G051000 Sobic002G190900--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic002G190900--Sobic009G176000 Sobic002G081600 Sobic002G081600 Sobic002G190900--Sobic002G081600 Sobic005G188100 Sobic005G188100 Sobic002G190900--Sobic005G188100 Sobic001G281400 Sobic001G281400 Sobic002G190900--Sobic001G281400 Sobic004G211833 Sobic004G211833 Sobic002G190900--Sobic004G211833 Sobic001G374700 Sobic001G374700 Sobic002G190900--Sobic001G374700 Sobic002G125700 Sobic002G125700 Sobic007G087200--Sobic002G125700 Sobic007G087200--Sobic010G259600 Sobic009G077800 Sobic009G077800 Sobic007G087200--Sobic009G077800 Sobic001G325400 Sobic001G325400 Sobic007G087200--Sobic001G325400 Sobic009G139400 Sobic009G139400 Sobic007G087200--Sobic009G139400 Sobic003G255200 Sobic003G255200 Sobic007G087200--Sobic003G255200 Sobic004G046200 Sobic004G046200 Sobic007G087200--Sobic004G046200 Sobic007G087200--Sobic004G101300 Sobic004G107700 Sobic004G107700 Sobic007G087200--Sobic004G107700 Sobic003G192100--Sobic005G018700 Sobic003G192100--Sobic004G101300 Sobic003G037500 Sobic003G037500 Sobic003G192100--Sobic003G037500 Sobic007G155000 Sobic007G155000 Sobic003G192100--Sobic007G155000 Sobic002G245100 Sobic002G245100 Sobic003G192100--Sobic002G245100 Sobic001G231700 Sobic001G231700 Sobic003G192100--Sobic001G231700 Sobic001G050100 Sobic001G050100 Sobic003G192100--Sobic001G050100 Sobic001G367600 Sobic001G367600 Sobic003G192100--Sobic001G367600 Sobic003G192100--Sobic004G340900 Sobic010G259600--Sobic009G159400 Sobic003G352300 Sobic003G352300 Sobic010G259600--Sobic003G352300 Sobic009G234100 Sobic009G234100 Sobic010G259600--Sobic009G234100 Sobic010G259600--Sobic002G125700 Sobic010G259600--Sobic007G087200 Sobic009G231000 Sobic009G231000 Sobic010G259600--Sobic009G231000 Sobic001G435000 Sobic001G435000 Sobic010G259600--Sobic001G435000 Sobic010G259600--Sobic003G255200 Sobic002G017800 Sobic002G017800 Sobic010G259600--Sobic002G017800 Sobic004G340900--Sobic009G159400 Sobic004G340900--Sobic002G017800 Sobic004G340900--Sobic009G077800 Sobic004G340900--Sobic010G259600 Sobic004G340900--Sobic001G389000 Sobic004G340900--Sobic005G018700 Sobic004G321300 Sobic004G321300 Sobic004G340900--Sobic004G321300 Sobic003G084400 Sobic003G084400 Sobic004G340900--Sobic003G084400 Sobic005G196800 Sobic005G196800 Sobic004G340900--Sobic005G196800 Sobic005G018700--Sobic002G245100 Sobic005G018700--Sobic002G017800 Sobic006G103000 Sobic006G103000 Sobic005G018700--Sobic006G103000 Sobic010G185000 Sobic010G185000 Sobic005G018700--Sobic010G185000 Sobic005G018700--Sobic003G429000 Sobic005G018700--Sobic003G037800 Sobic005G018700--Sobic004G340900 Sobic005G018700--Sobic001G050100 Sobic005G018700--Sobic003G192100 Sobic009G111000--Sobic002G017800 Sobic002G176100 Sobic002G176100 Sobic009G111000--Sobic002G176100 Sobic009G111000--Sobic001G367600 Sobic003G417200 Sobic003G417200 Sobic009G111000--Sobic003G417200 Sobic009G111000--Sobic001G325400 Sobic003G426400 Sobic003G426400 Sobic009G111000--Sobic003G426400 Sobic002G055700 Sobic002G055700 Sobic009G111000--Sobic002G055700 Sobic001G500000 Sobic001G500000 Sobic009G111000--Sobic001G500000 Sobic003G319500 Sobic003G319500 Sobic009G111000--Sobic003G319500 Sobic009G159400--Sobic001G038900 Sobic009G159400--Sobic001G435000 Sobic009G159400--Sobic004G321300 Sobic003G345100 Sobic003G345100 Sobic009G159400--Sobic003G345100 Sobic004G208700 Sobic004G208700 Sobic009G159400--Sobic004G208700 Sobic001G140900 Sobic001G140900 Sobic009G159400--Sobic001G140900 Sobic008G050600 Sobic008G050600 Sobic009G159400--Sobic008G050600 Sobic009G159400--Sobic010G259600 Sobic004G237800 Sobic004G237800 Sobic009G159400--Sobic004G237800
Octagon: transcription factors


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