Gene annotation
Transcriptome id Sobic.002G312900.1
Synonym Sb02g034240
Functional annotation protein phosphatase 2C, putative, expressed
UniProt C5X9C8
Pfam PF07228
Panther DB PTHR13832:SF333 PTHR13832
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K17506; PPM1L, protein phosphatase 1L
Gene Ontology GO:0004722; protein serine/threonine phosphatase activity GO:0006470protein dephosphorylation GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT3G15260 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os07g32380.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a048173
Brachypodium KQK16090
Barley HORVU2Hr1G048070.1 , HORVU2Hr1G048070.2 , HORVU2Hr1G048070.3
Wheat TraesCS2A02G233100 , TraesCS2B02G250100 , TraesCS2D02G232400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G176600 no apical meristem protein, putative, expressed -
2 Sobic.008G128900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
3 Sobic.010G195500 reductase, putative, expressed -
4 Sobic.005G043000 heat shock protein-related, putative, expressed -
5 Sobic.003G416300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.006G059700 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
7 Sobic.003G366600 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
8 Sobic.001G147900 cytochrome P450, putative, expressed -
9 Sobic.005G084600 ARGOS, putative, expressed -
10 Sobic.008G032100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.006G044100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
12 Sobic.010G009300 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
13 Sobic.010G185000 VQ domain containing protein, putative, expressed -
14 Sobic.006G125100 ubiquitin family protein, putative, expressed -
15 Sobic.010G209900 phospholipase D. Active site motif family protein, expressed K16860: phospholipase D3/4
16 Sobic.009G179900 OsCML9 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
17 Sobic.002G375400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
18 Sobic.003G417800 down-regulated TF in developmental senescence(PubMedID : 27586543)@histone-like transcription factor and archaeal histone, putative, expressed -
19 Sobic.008G191600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@vesicle-associated membrane protein, putative, expressed -
20 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -


Gene co-expression network
sample Sobic002G312900 Sobic002G312900 Sobic004G176600 Sobic004G176600 Sobic002G312900--Sobic004G176600 Sobic008G128900 Sobic008G128900 Sobic002G312900--Sobic008G128900 Sobic010G195500 Sobic010G195500 Sobic002G312900--Sobic010G195500 Sobic005G043000 Sobic005G043000 Sobic002G312900--Sobic005G043000 Sobic003G416300 Sobic003G416300 Sobic002G312900--Sobic003G416300 Sobic006G059700 Sobic006G059700 Sobic002G312900--Sobic006G059700 Sobic003G366600 Sobic003G366600 Sobic002G312900--Sobic003G366600 Sobic001G147900 Sobic001G147900 Sobic002G312900--Sobic001G147900 Sobic005G084600 Sobic005G084600 Sobic002G312900--Sobic005G084600 Sobic006G044100 Sobic006G044100 Sobic004G176600--Sobic006G044100 Sobic002G375400 Sobic002G375400 Sobic004G176600--Sobic002G375400 Sobic004G107700 Sobic004G107700 Sobic004G176600--Sobic004G107700 Sobic004G176600--Sobic005G084600 Sobic003G255200 Sobic003G255200 Sobic004G176600--Sobic003G255200 Sobic003G437200 Sobic003G437200 Sobic004G176600--Sobic003G437200 Sobic003G417800 Sobic003G417800 Sobic004G176600--Sobic003G417800 Sobic010G185000 Sobic010G185000 Sobic004G176600--Sobic010G185000 Sobic004G348400 Sobic004G348400 Sobic004G176600--Sobic004G348400 Sobic008G128900--Sobic002G312900 Sobic007G161400 Sobic007G161400 Sobic008G128900--Sobic007G161400 Sobic008G128900--Sobic003G416300 Sobic001G494000 Sobic001G494000 Sobic008G128900--Sobic001G494000 Sobic008G128900--Sobic005G043000 Sobic007G127100 Sobic007G127100 Sobic008G128900--Sobic007G127100 Sobic003G363800 Sobic003G363800 Sobic008G128900--Sobic003G363800 Sobic008G128900--Sobic010G195500 Sobic003G280400 Sobic003G280400 Sobic008G128900--Sobic003G280400 Sobic005G093000 Sobic005G093000 Sobic010G195500--Sobic005G093000 Sobic010G195500--Sobic002G312900 Sobic002G329000 Sobic002G329000 Sobic010G195500--Sobic002G329000 Sobic010G268400 Sobic010G268400 Sobic010G195500--Sobic010G268400 Sobic010G008400 Sobic010G008400 Sobic010G195500--Sobic010G008400 Sobic010G195500--Sobic001G147900 Sobic004G062500 Sobic004G062500 Sobic010G195500--Sobic004G062500 Sobic010G239500 Sobic010G239500 Sobic010G195500--Sobic010G239500 Sobic004G101300 Sobic004G101300 Sobic010G195500--Sobic004G101300 Sobic005G043000--Sobic002G312900 Sobic010G272300 Sobic010G272300 Sobic005G043000--Sobic010G272300 Sobic005G043000--Sobic006G059700 Sobic005G043000--Sobic007G161400 Sobic002G196100 Sobic002G196100 Sobic005G043000--Sobic002G196100 Sobic005G043000--Sobic001G147900 Sobic001G082600 Sobic001G082600 Sobic005G043000--Sobic001G082600 Sobic005G043000--Sobic008G128900 Sobic005G043000--Sobic003G366600 Sobic005G168800 Sobic005G168800 Sobic003G416300--Sobic005G168800 Sobic002G327300 Sobic002G327300 Sobic003G416300--Sobic002G327300 Sobic004G046200 Sobic004G046200 Sobic003G416300--Sobic004G046200 Sobic003G050200 Sobic003G050200 Sobic003G416300--Sobic003G050200 Sobic003G416300--Sobic002G312900 Sobic003G416300--Sobic007G127100 Sobic003G079400 Sobic003G079400 Sobic003G416300--Sobic003G079400 Sobic008G106700 Sobic008G106700 Sobic003G416300--Sobic008G106700 Sobic003G416300--Sobic001G082600 Sobic003G404600 Sobic003G404600 Sobic006G059700--Sobic003G404600 Sobic004G262200 Sobic004G262200 Sobic006G059700--Sobic004G262200 Sobic006G059700--Sobic003G280400 Sobic006G059700--Sobic010G272300 Sobic010G001000 Sobic010G001000 Sobic006G059700--Sobic010G001000 Sobic006G059700--Sobic003G366600 Sobic006G059700--Sobic001G147900 Sobic006G125100 Sobic006G125100 Sobic006G059700--Sobic006G125100 Sobic006G059700--Sobic002G312900 Sobic003G366600--Sobic004G348400 Sobic003G366600--Sobic006G044100 Sobic006G157900 Sobic006G157900 Sobic003G366600--Sobic006G157900 Sobic003G366600--Sobic010G185000 Sobic003G366600--Sobic003G404600 Sobic001G481400 Sobic001G481400 Sobic003G366600--Sobic001G481400 Sobic001G403000 Sobic001G403000 Sobic003G366600--Sobic001G403000 Sobic009G072900 Sobic009G072900 Sobic003G366600--Sobic009G072900 Sobic003G366600--Sobic006G059700 Sobic003G368600 Sobic003G368600 Sobic001G147900--Sobic003G368600 Sobic006G197100 Sobic006G197100 Sobic001G147900--Sobic006G197100 Sobic001G147900--Sobic003G404600 Sobic006G243600 Sobic006G243600 Sobic001G147900--Sobic006G243600 Sobic002G003800 Sobic002G003800 Sobic001G147900--Sobic002G003800 Sobic003G152200 Sobic003G152200 Sobic001G147900--Sobic003G152200 Sobic006G256900 Sobic006G256900 Sobic001G147900--Sobic006G256900 Sobic001G147900--Sobic004G348400 Sobic001G147900--Sobic006G059700 Sobic005G084600--Sobic004G176600 Sobic001G339700 Sobic001G339700 Sobic005G084600--Sobic001G339700 Sobic009G120000 Sobic009G120000 Sobic005G084600--Sobic009G120000 Sobic008G032100 Sobic008G032100 Sobic005G084600--Sobic008G032100 Sobic005G206601 Sobic005G206601 Sobic005G084600--Sobic005G206601 Sobic005G084600--Sobic002G375400 Sobic010G009300 Sobic010G009300 Sobic005G084600--Sobic010G009300 Sobic005G084600--Sobic010G185000 Sobic005G084600--Sobic003G417800
Octagon: transcription factors


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