Gene annotation
Transcriptome id Sobic.010G009300.4,Sobic.010G009300.5,Sobic.010G009300.3,Sobic.010G009300.6,Sobic.010G009300.1,Sobic.010G009300.2
Synonym Sb10g001050
Functional annotation 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
UniProt A0A1W0VR01 , A0A194YGQ1
Pfam PF03446 PF00393
Panther DB PTHR11811 PTHR11811:SF33
NCBI CDD -
KEGG Orthology K00033; PGD, gnd, 6-phosphogluconate dehydrogenase
Gene Ontology GO:0004616; phosphogluconate dehydrogenase (decarboxylating) activity GO:0006098pentose-phosphate shunt


Orthologs (automatic annotation)
TAIR AT3G02360 : 6-phosphogluconate dehydrogenase family protein
RAP-DB (Rice) LOC_Os06g02144.2,LOC_Os06g02144.1 : 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
MaizeGDB (Corn) Zm00025a026099 , Zm00025a041183
Brachypodium KQK19748
Barley HORVU7Hr1G006160.4 , HORVU7Hr1G006160.5 , HORVU7Hr1G006160.1 , HORVU7Hr1G006160.2 , HORVU7Hr1G006160.3
Wheat TraesCS7A02G092300 , TraesCS7A02G092300 , TraesCS3D02G491400
Populus PNT40648 , PNT40645 , PNT40646 , PNT40647 , PNS96275 , PNS96274 , PNS24004 , PNS24003 , PNT24057 , PNT24058


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cDNA sequences
Sobic.010G009300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
2 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
3 Sobic.009G139400 expressed protein -
4 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
5 Sobic.002G190900 expressed protein -
6 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
7 Sobic.009G077800 expressed protein -
8 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.004G107700 expressed protein -
10 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.001G187200 expressed protein -
12 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
13 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
14 Sobic.003G252800 hypothetical protein -
15 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
16 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
17 Sobic.008G032100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
19 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
20 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease


Gene co-expression network
sample Sobic010G009300 Sobic010G009300 Sobic001G177800 Sobic001G177800 Sobic010G009300--Sobic001G177800 Sobic007G184600 Sobic007G184600 Sobic010G009300--Sobic007G184600 Sobic009G139400 Sobic009G139400 Sobic010G009300--Sobic009G139400 Sobic002G187500 Sobic002G187500 Sobic010G009300--Sobic002G187500 Sobic002G190900 Sobic002G190900 Sobic010G009300--Sobic002G190900 Sobic001G252300 Sobic001G252300 Sobic010G009300--Sobic001G252300 Sobic009G077800 Sobic009G077800 Sobic010G009300--Sobic009G077800 Sobic006G099900 Sobic006G099900 Sobic010G009300--Sobic006G099900 Sobic004G107700 Sobic004G107700 Sobic010G009300--Sobic004G107700 Sobic001G177800--Sobic007G184600 Sobic001G177800--Sobic009G139400 Sobic001G374700 Sobic001G374700 Sobic001G177800--Sobic001G374700 Sobic001G402050 Sobic001G402050 Sobic001G177800--Sobic001G402050 Sobic007G227300 Sobic007G227300 Sobic001G177800--Sobic007G227300 Sobic002G200600 Sobic002G200600 Sobic001G177800--Sobic002G200600 Sobic004G189400 Sobic004G189400 Sobic001G177800--Sobic004G189400 Sobic001G177800--Sobic006G099900 Sobic001G177800--Sobic010G009300 Sobic007G184600--Sobic002G200600 Sobic007G184600--Sobic001G374700 Sobic007G184600--Sobic001G402050 Sobic002G081600 Sobic002G081600 Sobic007G184600--Sobic002G081600 Sobic001G493001 Sobic001G493001 Sobic007G184600--Sobic001G493001 Sobic007G184600--Sobic001G177800 Sobic006G067800 Sobic006G067800 Sobic007G184600--Sobic006G067800 Sobic003G322400 Sobic003G322400 Sobic007G184600--Sobic003G322400 Sobic003G346600 Sobic003G346600 Sobic007G184600--Sobic003G346600 Sobic009G139400--Sobic009G077800 Sobic003G297600 Sobic003G297600 Sobic009G139400--Sobic003G297600 Sobic001G119400 Sobic001G119400 Sobic009G139400--Sobic001G119400 Sobic009G139400--Sobic001G177800 Sobic009G139400--Sobic007G184600 Sobic010G066700 Sobic010G066700 Sobic009G139400--Sobic010G066700 Sobic002G353900 Sobic002G353900 Sobic009G139400--Sobic002G353900 Sobic003G382600 Sobic003G382600 Sobic009G139400--Sobic003G382600 Sobic005G029200 Sobic005G029200 Sobic009G139400--Sobic005G029200 Sobic002G187500--Sobic010G009300 Sobic003G285800 Sobic003G285800 Sobic002G187500--Sobic003G285800 Sobic002G187500--Sobic002G190900 Sobic002G046100 Sobic002G046100 Sobic002G187500--Sobic002G046100 Sobic003G072300 Sobic003G072300 Sobic002G187500--Sobic003G072300 Sobic002G187500--Sobic001G177800 Sobic002G187500--Sobic002G081600 Sobic001G281400 Sobic001G281400 Sobic002G187500--Sobic001G281400 Sobic003G393700 Sobic003G393700 Sobic002G187500--Sobic003G393700 Sobic002G398901 Sobic002G398901 Sobic002G190900--Sobic002G398901 Sobic010G012500 Sobic010G012500 Sobic002G190900--Sobic010G012500 Sobic007G051000 Sobic007G051000 Sobic002G190900--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic002G190900--Sobic009G176000 Sobic002G190900--Sobic002G081600 Sobic005G188100 Sobic005G188100 Sobic002G190900--Sobic005G188100 Sobic002G190900--Sobic001G281400 Sobic004G211833 Sobic004G211833 Sobic002G190900--Sobic004G211833 Sobic002G190900--Sobic001G374700 Sobic002G414600 Sobic002G414600 Sobic001G252300--Sobic002G414600 Sobic004G166700 Sobic004G166700 Sobic001G252300--Sobic004G166700 Sobic005G051200 Sobic005G051200 Sobic001G252300--Sobic005G051200 Sobic004G208700 Sobic004G208700 Sobic001G252300--Sobic004G208700 Sobic001G317200 Sobic001G317200 Sobic001G252300--Sobic001G317200 Sobic001G252300--Sobic003G297600 Sobic002G416600 Sobic002G416600 Sobic001G252300--Sobic002G416600 Sobic008G050600 Sobic008G050600 Sobic001G252300--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic001G252300--Sobic003G286600 Sobic009G077800--Sobic003G297600 Sobic009G077800--Sobic009G139400 Sobic009G077800--Sobic003G393700 Sobic001G070800 Sobic001G070800 Sobic009G077800--Sobic001G070800 Sobic002G055700 Sobic002G055700 Sobic009G077800--Sobic002G055700 Sobic002G017800 Sobic002G017800 Sobic009G077800--Sobic002G017800 Sobic009G077800--Sobic005G029200 Sobic001G325400 Sobic001G325400 Sobic009G077800--Sobic001G325400 Sobic007G087200 Sobic007G087200 Sobic009G077800--Sobic007G087200 Sobic006G099900--Sobic007G227300 Sobic003G252800 Sobic003G252800 Sobic006G099900--Sobic003G252800 Sobic006G099900--Sobic001G317200 Sobic006G099900--Sobic003G286600 Sobic010G084400 Sobic010G084400 Sobic006G099900--Sobic010G084400 Sobic006G099900--Sobic004G189400 Sobic006G099900--Sobic008G050600 Sobic005G091500 Sobic005G091500 Sobic006G099900--Sobic005G091500 Sobic006G277600 Sobic006G277600 Sobic006G099900--Sobic006G277600 Sobic003G255200 Sobic003G255200 Sobic004G107700--Sobic003G255200 Sobic003G437200 Sobic003G437200 Sobic004G107700--Sobic003G437200 Sobic002G125700 Sobic002G125700 Sobic004G107700--Sobic002G125700 Sobic003G417800 Sobic003G417800 Sobic004G107700--Sobic003G417800 Sobic001G503100 Sobic001G503100 Sobic004G107700--Sobic001G503100 Sobic002G034800 Sobic002G034800 Sobic004G107700--Sobic002G034800 Sobic004G107700--Sobic009G139400 Sobic003G352300 Sobic003G352300 Sobic004G107700--Sobic003G352300 Sobic004G176600 Sobic004G176600 Sobic004G107700--Sobic004G176600
Octagon: transcription factors


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