Gene annotation
Transcriptome id Sobic.001G494000.1
Synonym BLH7, Sb01g046170
Functional annotation Expressed in older stem (PubMedID : 28649278)
homeodomain protein, putative, expressed
UniProt C5WWV8
Pfam PF05920 PF07526
Panther DB PTHR11850 PTHR11850:SF65
NCBI CDD KOG0773; Transcription factor MEIS1 and related HOX domain proteins
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G34610 : BEL1-like homeodomain 6
RAP-DB (Rice) LOC_Os03g06930.1 : homeodomain protein, putative, expressed
MaizeGDB (Corn) Zm00025a008024 , Zm00025a000805
Brachypodium KQK23910 , KQK23911 , KQK23477 , KQK23909 , KQJ96691
Barley HORVU4Hr1G084590.10 , HORVU4Hr1G084590.15 , HORVU4Hr1G084590.9 , HORVU4Hr1G084590.2 , HORVU4Hr1G084590.4 , HORVU4Hr1G084590.5 , HORVU7Hr1G088090.8 , HORVU7Hr1G088090.6 , HORVU7Hr1G088090.7 , HORVU7Hr1G088090.4 , HORVU7Hr1G088090.5 , HORVU7Hr1G088090.3 , HORVU7Hr1G088090.1 , HORVU4Hr1G074250.1 , HORVU4Hr1G074250.2 , HORVU4Hr1G084590.11 , HORVU4Hr1G084590.16 , HORVU7Hr1G088090.10 , HORVU7Hr1G088090.11 , HORVU7Hr1G088090.12 , HORVU7Hr1G088090.13 , HORVU6Hr1G014680.3 , HORVU6Hr1G014680.2 , HORVU6Hr1G014680.1 , HORVU6Hr1G014680.7 , HORVU6Hr1G014680.4
Wheat TraesCS4D02G340700 , TraesCS4A02G022700 , TraesCS7D02G364500 , TraesCS4D02G279300 , TraesCS7B02G269400 , TraesCS5A02G514700 , TraesCS4B02G280700 , TraesCS7A02G358300 , TraesCS4B02G345600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G494000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G106700 isoflavone reductase, putative, expressed -
2 Sobic.003G343900 expressed protein -
3 Sobic.007G186100 protein kinase, putative, expressed K13436: pto-interacting protein 1
4 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
5 Sobic.003G219800 transferase family protein, putative, expressed -
6 Sobic.010G195500 reductase, putative, expressed -
7 Sobic.003G079400 Ser/Thr protein kinase, putative, expressed -
8 Sobic.010G062100 expressed protein -
9 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
10 Sobic.010G008400 bark storage protein A precursor, putative, expressed -
11 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
12 Sobic.001G139100 expressed protein -
13 Sobic.002G411900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@SRC2 protein, putative, expressed -
14 Sobic.001G009500 - -
15 Sobic.008G128900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
16 Sobic.003G416300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.009G181800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 9484480)@cytochrome P450, putative, expressed K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase
18 Sobic.005G168800 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
19 Sobic.006G203700 EF hand family protein, putative, expressed -
20 Sobic.006G044100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic001G494000 Sobic001G494000 Sobic008G106700 Sobic008G106700 Sobic001G494000--Sobic008G106700 Sobic003G343900 Sobic003G343900 Sobic001G494000--Sobic003G343900 Sobic007G186100 Sobic007G186100 Sobic001G494000--Sobic007G186100 Sobic004G046200 Sobic004G046200 Sobic001G494000--Sobic004G046200 Sobic003G219800 Sobic003G219800 Sobic001G494000--Sobic003G219800 Sobic010G195500 Sobic010G195500 Sobic001G494000--Sobic010G195500 Sobic003G079400 Sobic003G079400 Sobic001G494000--Sobic003G079400 Sobic010G062100 Sobic010G062100 Sobic001G494000--Sobic010G062100 Sobic002G003800 Sobic002G003800 Sobic001G494000--Sobic002G003800 Sobic008G106700--Sobic004G046200 Sobic001G500000 Sobic001G500000 Sobic008G106700--Sobic001G500000 Sobic006G044100 Sobic006G044100 Sobic008G106700--Sobic006G044100 Sobic003G084400 Sobic003G084400 Sobic008G106700--Sobic003G084400 Sobic008G106700--Sobic003G079400 Sobic009G183400 Sobic009G183400 Sobic008G106700--Sobic009G183400 Sobic009G179900 Sobic009G179900 Sobic008G106700--Sobic009G179900 Sobic001G139100 Sobic001G139100 Sobic008G106700--Sobic001G139100 Sobic006G199800 Sobic006G199800 Sobic008G106700--Sobic006G199800 Sobic003G343900--Sobic001G494000 Sobic001G009500 Sobic001G009500 Sobic003G343900--Sobic001G009500 Sobic010G252500 Sobic010G252500 Sobic003G343900--Sobic010G252500 Sobic001G389000 Sobic001G389000 Sobic003G343900--Sobic001G389000 Sobic003G343900--Sobic008G106700 Sobic003G343900--Sobic009G179900 Sobic005G093000 Sobic005G093000 Sobic003G343900--Sobic005G093000 Sobic003G429000 Sobic003G429000 Sobic003G343900--Sobic003G429000 Sobic003G417350 Sobic003G417350 Sobic003G343900--Sobic003G417350 Sobic007G186100--Sobic001G494000 Sobic007G186100--Sobic003G343900 Sobic003G119500 Sobic003G119500 Sobic007G186100--Sobic003G119500 Sobic004G062500 Sobic004G062500 Sobic007G186100--Sobic004G062500 Sobic007G186100--Sobic010G062100 Sobic004G212300 Sobic004G212300 Sobic007G186100--Sobic004G212300 Sobic007G186100--Sobic003G219800 Sobic009G181800 Sobic009G181800 Sobic007G186100--Sobic009G181800 Sobic003G316000 Sobic003G316000 Sobic007G186100--Sobic003G316000 Sobic004G046200--Sobic008G106700 Sobic004G046200--Sobic006G044100 Sobic009G187200 Sobic009G187200 Sobic004G046200--Sobic009G187200 Sobic004G046200--Sobic006G199800 Sobic004G046200--Sobic003G084400 Sobic003G255200 Sobic003G255200 Sobic004G046200--Sobic003G255200 Sobic004G046200--Sobic001G500000 Sobic004G046200--Sobic003G079400 Sobic009G111000 Sobic009G111000 Sobic004G046200--Sobic009G111000 Sobic001G418100 Sobic001G418100 Sobic003G219800--Sobic001G418100 Sobic003G219800--Sobic009G181800 Sobic001G444800 Sobic001G444800 Sobic003G219800--Sobic001G444800 Sobic006G156000 Sobic006G156000 Sobic003G219800--Sobic006G156000 Sobic003G443300 Sobic003G443300 Sobic003G219800--Sobic003G443300 Sobic001G040100 Sobic001G040100 Sobic003G219800--Sobic001G040100 Sobic005G112800 Sobic005G112800 Sobic003G219800--Sobic005G112800 Sobic005G113300 Sobic005G113300 Sobic003G219800--Sobic005G113300 Sobic009G238900 Sobic009G238900 Sobic003G219800--Sobic009G238900 Sobic010G195500--Sobic005G093000 Sobic002G312900 Sobic002G312900 Sobic010G195500--Sobic002G312900 Sobic002G329000 Sobic002G329000 Sobic010G195500--Sobic002G329000 Sobic010G268400 Sobic010G268400 Sobic010G195500--Sobic010G268400 Sobic010G008400 Sobic010G008400 Sobic010G195500--Sobic010G008400 Sobic001G147900 Sobic001G147900 Sobic010G195500--Sobic001G147900 Sobic010G195500--Sobic004G062500 Sobic010G239500 Sobic010G239500 Sobic010G195500--Sobic010G239500 Sobic004G101300 Sobic004G101300 Sobic010G195500--Sobic004G101300 Sobic003G079400--Sobic004G046200 Sobic001G082600 Sobic001G082600 Sobic003G079400--Sobic001G082600 Sobic006G197100 Sobic006G197100 Sobic003G079400--Sobic006G197100 Sobic003G079400--Sobic002G003800 Sobic004G042000 Sobic004G042000 Sobic003G079400--Sobic004G042000 Sobic003G079400--Sobic008G106700 Sobic003G016100 Sobic003G016100 Sobic003G079400--Sobic003G016100 Sobic004G349125 Sobic004G349125 Sobic003G079400--Sobic004G349125 Sobic003G079400--Sobic009G187200 Sobic010G062100--Sobic001G494000 Sobic010G062100--Sobic001G009500 Sobic003G371750 Sobic003G371750 Sobic010G062100--Sobic003G371750 Sobic010G062100--Sobic007G186100 Sobic010G062100--Sobic003G343900 Sobic007G176000 Sobic007G176000 Sobic010G062100--Sobic007G176000 Sobic010G062100--Sobic008G106700 Sobic007G176100 Sobic007G176100 Sobic010G062100--Sobic007G176100 Sobic004G262200 Sobic004G262200 Sobic010G062100--Sobic004G262200 Sobic002G003800--Sobic006G197100 Sobic002G003800--Sobic004G042000 Sobic003G311800 Sobic003G311800 Sobic002G003800--Sobic003G311800 Sobic001G302600 Sobic001G302600 Sobic002G003800--Sobic001G302600 Sobic001G049900 Sobic001G049900 Sobic002G003800--Sobic001G049900 Sobic001G416200 Sobic001G416200 Sobic002G003800--Sobic001G416200 Sobic004G310200 Sobic004G310200 Sobic002G003800--Sobic004G310200 Sobic002G003800--Sobic003G079400 Sobic001G304100 Sobic001G304100 Sobic002G003800--Sobic001G304100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.