Gene annotation
Transcriptome id Sobic.003G343900.1
Synonym Sb03g038780
Functional annotation expressed protein
UniProt C5XNZ3
Pfam -
Panther DB PTHR10209 PTHR10209:SF199
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G11150 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os01g61440.1 : expressed protein
MaizeGDB (Corn) Zm00025a027002
Brachypodium KQK10415
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G494000 Expressed in older stem(PubMedID : 28649278)@homeodomain protein, putative, expressed -
2 Sobic.001G009500 - -
3 Sobic.010G252500 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSAUR28 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
4 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
5 Sobic.008G106700 isoflavone reductase, putative, expressed -
6 Sobic.009G179900 OsCML9 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
7 Sobic.005G093000 - -
8 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -
9 Sobic.003G417350 - -
10 Sobic.002G329000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-ld.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -
11 Sobic.007G186100 protein kinase, putative, expressed K13436: pto-interacting protein 1
12 Sobic.010G262200 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
13 Sobic.003G037800 transferase family protein, putative, expressed -
14 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
15 Sobic.006G044100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
16 Sobic.004G101300 expressed protein -
17 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
18 Sobic.010G195500 reductase, putative, expressed -
19 Sobic.010G239500 ubiquitin family protein, putative, expressed K08770: ubiquitin C
20 Sobic.001G500000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G343900 Sobic003G343900 Sobic001G494000 Sobic001G494000 Sobic003G343900--Sobic001G494000 Sobic001G009500 Sobic001G009500 Sobic003G343900--Sobic001G009500 Sobic010G252500 Sobic010G252500 Sobic003G343900--Sobic010G252500 Sobic001G389000 Sobic001G389000 Sobic003G343900--Sobic001G389000 Sobic008G106700 Sobic008G106700 Sobic003G343900--Sobic008G106700 Sobic009G179900 Sobic009G179900 Sobic003G343900--Sobic009G179900 Sobic005G093000 Sobic005G093000 Sobic003G343900--Sobic005G093000 Sobic003G429000 Sobic003G429000 Sobic003G343900--Sobic003G429000 Sobic003G417350 Sobic003G417350 Sobic003G343900--Sobic003G417350 Sobic001G494000--Sobic008G106700 Sobic001G494000--Sobic003G343900 Sobic007G186100 Sobic007G186100 Sobic001G494000--Sobic007G186100 Sobic004G046200 Sobic004G046200 Sobic001G494000--Sobic004G046200 Sobic003G219800 Sobic003G219800 Sobic001G494000--Sobic003G219800 Sobic010G195500 Sobic010G195500 Sobic001G494000--Sobic010G195500 Sobic003G079400 Sobic003G079400 Sobic001G494000--Sobic003G079400 Sobic010G062100 Sobic010G062100 Sobic001G494000--Sobic010G062100 Sobic002G003800 Sobic002G003800 Sobic001G494000--Sobic002G003800 Sobic001G247600 Sobic001G247600 Sobic001G009500--Sobic001G247600 Sobic001G009500--Sobic008G106700 Sobic001G009500--Sobic003G343900 Sobic001G009500--Sobic001G389000 Sobic009G074100 Sobic009G074100 Sobic001G009500--Sobic009G074100 Sobic001G119400 Sobic001G119400 Sobic001G009500--Sobic001G119400 Sobic004G100700 Sobic004G100700 Sobic001G009500--Sobic004G100700 Sobic004G075000 Sobic004G075000 Sobic001G009500--Sobic004G075000 Sobic008G186100 Sobic008G186100 Sobic001G009500--Sobic008G186100 Sobic007G218800 Sobic007G218800 Sobic010G252500--Sobic007G218800 Sobic007G030501 Sobic007G030501 Sobic010G252500--Sobic007G030501 Sobic004G062500 Sobic004G062500 Sobic010G252500--Sobic004G062500 Sobic010G252500--Sobic002G003800 Sobic006G197100 Sobic006G197100 Sobic010G252500--Sobic006G197100 Sobic003G404600 Sobic003G404600 Sobic010G252500--Sobic003G404600 Sobic010G252500--Sobic003G343900 Sobic003G311800 Sobic003G311800 Sobic010G252500--Sobic003G311800 Sobic004G139300 Sobic004G139300 Sobic010G252500--Sobic004G139300 Sobic009G159400 Sobic009G159400 Sobic001G389000--Sobic009G159400 Sobic003G037800 Sobic003G037800 Sobic001G389000--Sobic003G037800 Sobic004G101300 Sobic004G101300 Sobic001G389000--Sobic004G101300 Sobic004G340900 Sobic004G340900 Sobic001G389000--Sobic004G340900 Sobic010G259600 Sobic010G259600 Sobic001G389000--Sobic010G259600 Sobic006G092500 Sobic006G092500 Sobic001G389000--Sobic006G092500 Sobic001G139100 Sobic001G139100 Sobic001G389000--Sobic001G139100 Sobic001G038900 Sobic001G038900 Sobic001G389000--Sobic001G038900 Sobic001G389000--Sobic003G429000 Sobic008G106700--Sobic004G046200 Sobic001G500000 Sobic001G500000 Sobic008G106700--Sobic001G500000 Sobic006G044100 Sobic006G044100 Sobic008G106700--Sobic006G044100 Sobic003G084400 Sobic003G084400 Sobic008G106700--Sobic003G084400 Sobic008G106700--Sobic003G079400 Sobic009G183400 Sobic009G183400 Sobic008G106700--Sobic009G183400 Sobic008G106700--Sobic009G179900 Sobic008G106700--Sobic001G139100 Sobic006G199800 Sobic006G199800 Sobic008G106700--Sobic006G199800 Sobic009G179900--Sobic008G106700 Sobic003G062600 Sobic003G062600 Sobic009G179900--Sobic003G062600 Sobic003G255200 Sobic003G255200 Sobic009G179900--Sobic003G255200 Sobic009G179900--Sobic006G044100 Sobic004G176600 Sobic004G176600 Sobic009G179900--Sobic004G176600 Sobic001G082600 Sobic001G082600 Sobic009G179900--Sobic001G082600 Sobic009G179900--Sobic004G046200 Sobic002G034800 Sobic002G034800 Sobic009G179900--Sobic002G034800 Sobic003G417800 Sobic003G417800 Sobic009G179900--Sobic003G417800 Sobic002G329000 Sobic002G329000 Sobic005G093000--Sobic002G329000 Sobic005G093000--Sobic001G389000 Sobic010G136000 Sobic010G136000 Sobic005G093000--Sobic010G136000 Sobic005G093000--Sobic010G195500 Sobic010G268400 Sobic010G268400 Sobic005G093000--Sobic010G268400 Sobic005G093000--Sobic003G429000 Sobic005G018700 Sobic005G018700 Sobic005G093000--Sobic005G018700 Sobic005G093000--Sobic001G500000 Sobic005G093000--Sobic009G074100 Sobic003G429000--Sobic003G037800 Sobic003G429000--Sobic005G018700 Sobic001G050100 Sobic001G050100 Sobic003G429000--Sobic001G050100 Sobic003G429000--Sobic001G389000 Sobic003G429000--Sobic002G329000 Sobic002G245100 Sobic002G245100 Sobic003G429000--Sobic002G245100 Sobic003G429000--Sobic009G159400 Sobic007G184600 Sobic007G184600 Sobic003G429000--Sobic007G184600 Sobic002G175100 Sobic002G175100 Sobic003G429000--Sobic002G175100 Sobic003G192100 Sobic003G192100 Sobic003G417350--Sobic003G192100 Sobic002G326100 Sobic002G326100 Sobic003G417350--Sobic002G326100 Sobic001G015100 Sobic001G015100 Sobic003G417350--Sobic001G015100 Sobic003G417350--Sobic002G329000 Sobic007G155000 Sobic007G155000 Sobic003G417350--Sobic007G155000 Sobic003G417350--Sobic001G038900 Sobic001G192600 Sobic001G192600 Sobic003G417350--Sobic001G192600 Sobic003G417350--Sobic010G268400 Sobic001G367600 Sobic001G367600 Sobic003G417350--Sobic001G367600
Octagon: transcription factors


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