Gene annotation
| Transcriptome id | Sobic.007G186100.1,Sobic.007G186100.4,Sobic.007G186100.3,Sobic.007G186100.2 |
|---|---|
| Synonym | Sb07g025590 |
| Functional annotation | protein kinase, putative, expressed |
| UniProt | C5YHJ9 |
| Pfam | PF07714 |
| Panther DB | PTHR27001 PTHR27001:SF115 |
| NCBI CDD | KOG1187; Serine/threonine protein kinase |
| KEGG Orthology | K13436; pto-interacting protein 1 |
| Gene Ontology | GO:0006468; protein phosphorylation GO:0004672protein kinase activity |
Orthologs (automatic annotation)
| TAIR | AT3G59350 : Protein kinase superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os09g33860.1 : protein kinase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a047639 , Zm00025a005331 |
| Brachypodium | KQJ99203 |
| Barley | - |
| Wheat | TraesCS7B02G164600 , TraesCS7D02G267300 , TraesCS7A02G267400 |
| Populus | - |
JBrowse
| Sobic.007G186100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G494000 | Expressed in older stem(PubMedID : 28649278)@homeodomain protein, putative, expressed | - |
| 2 | Sobic.003G343900 | expressed protein | - |
| 3 | Sobic.003G119500 | expressed protein | - |
| 4 | Sobic.004G062500 | "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed | K01904: 4-coumarate--CoA ligase |
| 5 | Sobic.010G062100 | expressed protein | - |
| 6 | Sobic.004G212300 | determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed | K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase |
| 7 | Sobic.003G219800 | transferase family protein, putative, expressed | - |
| 8 | Sobic.009G181800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 9484480)@cytochrome P450, putative, expressed | K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase |
| 9 | Sobic.003G316000 | expressed protein | - |
| 10 | Sobic.004G042000 | apoptosis-inducing factor 2, putative, expressed | - |
| 11 | Sobic.010G195500 | reductase, putative, expressed | - |
| 12 | Sobic.002G003800 | plastocyanin-like domain containing protein, putative, expressed | - |
| 13 | Sobic.005G168800 | DJ-1 family protein, putative, expressed | K18881: D-lactate dehydratase |
| 14 | Sobic.010G252500 | "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSAUR28 - Auxin-responsive SAUR gene family member, expressed | K14488: SAUR family protein |
| 15 | Sobic.010G252401 | - | K14488: SAUR family protein |
| 16 | Sobic.003G079400 | Ser/Thr protein kinase, putative, expressed | - |
| 17 | Sobic.008G106700 | isoflavone reductase, putative, expressed | - |
| 18 | Sobic.009G179900 | OsCML9 - Calmodulin-related calcium sensor protein, expressed | K02183: calmodulin |
| 19 | Sobic.001G389000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed | - |
| 20 | Sobic.003G371750 | - | - |
Gene co-expression network
Octagon: transcription factors
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