Gene annotation
| Transcriptome id | Sobic.004G212300.1 |
|---|---|
| Synonym | Hydroxycinnamoyltransferase, Sb04g025760, HCT, SbHCT;HCT;HCT |
| Functional annotation | determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA (PubMedID : 23624856) "shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element" (PubMedID : 24045932) SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) transferase family protein, putative, expressed |
| UniProt | C5XXB7 |
| Pfam | PF02458 |
| Panther DB | PTHR31642 PTHR31642:SF37 |
| NCBI CDD | - |
| KEGG Orthology | K13065; E2.3.1.133, shikimate O-hydroxycinnamoyltransferase |
| Gene Ontology | GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups |
Orthologs (automatic annotation)
| TAIR | AT5G48930 : hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase |
|---|---|
| RAP-DB (Rice) | LOC_Os02g39850.1 : transferase family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a053202 , Zm00025a021203 , Zm00025a010790 |
| Brachypodium | KQJ83393 , KQK00300 , KQJ83392 |
| Barley | HORVU6Hr1G056230.1 , HORVU1Hr1G081430.3 , HORVU1Hr1G081430.4 , HORVU2Hr1G086380.1 , HORVU2Hr1G086380.3 , HORVU2Hr1G086380.2 , HORVU6Hr1G056230.2 , HORVU6Hr1G056230.3 |
| Wheat | TraesCS3D02G525000 , TraesCS1D02G021600 , TraesCS6B02G249400 , TraesCS6D02G203000 , TraesCS6A02G232200 , TraesCS3A02G517500 , TraesCS1B02G005300 |
| Populus | - |
JBrowse
| Sobic.004G212300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G052200 | "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S-adenosyl methionine (SAM)-dependent O-methyltransferase(PubMedID : 30289910)@enzyme involved in monolignol synthesis(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase(PubMedID : 27457122)@caffeoyl-CoA O-methyltransferase, putative, expressed | K00588: caffeoyl-CoA O-methyltransferase |
| 2 | Sobic.001G532200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed | - |
| 3 | Sobic.003G119500 | expressed protein | - |
| 4 | Sobic.004G062500 | "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed | K01904: 4-coumarate--CoA ligase |
| 5 | Sobic.001G084100 | UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed | K00012: UGDH, UDPglucose 6-dehydrogenase |
| 6 | Sobic.001G516600 | AMP-binding domain containing protein, expressed | K10526: OPC-8:0 CoA ligase 1 |
| 7 | Sobic.006G156000 | ferredoxin-thioredoxin reductase, variable chain, putative, expressed | - |
| 8 | Sobic.002G040600 | zinc finger, C3HC4 type domain containing protein, expressed | K19043: E3 ubiquitin-protein ligase RHF |
| 9 | Sobic.010G252500 | "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSAUR28 - Auxin-responsive SAUR gene family member, expressed | K14488: SAUR family protein |
| 10 | Sobic.002G361700 | expressed protein | - |
| 11 | Sobic.001G389700 | VQ domain containing protein, putative, expressed | - |
| 12 | Sobic.007G186100 | protein kinase, putative, expressed | K13436: pto-interacting protein 1 |
| 13 | Sobic.003G037800 | transferase family protein, putative, expressed | - |
| 14 | Sobic.005G168100 | ADP-ribosylation factor, putative, expressed | K07950: ADP-ribosylation factor-like protein 5B |
| 15 | Sobic.005G142300 | expressed protein | K19042: E3 ubiquitin-protein ligase BOI and related proteins |
| 16 | Sobic.001G353300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed | K01087: trehalose 6-phosphate phosphatase |
| 17 | Sobic.003G219800 | transferase family protein, putative, expressed | - |
| 18 | Sobic.001G432000 | LYR motif containing protein, putative, expressed | - |
| 19 | Sobic.007G218800 | "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed | K18883: tricin synthase |
| 20 | Sobic.001G235800 | peroxidase precursor, putative, expressed | K00430: peroxidase |
Gene co-expression network
Octagon: transcription factors
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