Gene annotation
Transcriptome id Sobic.001G353300.2,Sobic.001G353300.1
Synonym Sb01g033800
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed
UniProt C5WYJ4 , A0A1Z5S9B1
Pfam PF02358
Panther DB PTHR10788 PTHR10788:SF43
NCBI CDD -
KEGG Orthology K01087; trehalose 6-phosphate phosphatase
Gene Ontology GO:0005992; trehalose biosynthetic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G65140 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os03g26910.1 : uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed
MaizeGDB (Corn) Zm00025a046718 , Zm00025a006067 , Zm00025a015246 , Zm00025a013816 , Zm00025a002697 , Zm00025a033170
Brachypodium KQJ90023 , KQJ98224 , KQK21468 , KQK01866
Barley HORVU6Hr1G074960.8 , HORVU6Hr1G074960.9 , HORVU6Hr1G074960.4 , HORVU6Hr1G074960.5 , HORVU6Hr1G074960.6 , HORVU6Hr1G074960.7 , HORVU6Hr1G074960.2 , HORVU6Hr1G074960.3 , HORVU6Hr1G074960.21 , HORVU6Hr1G074960.20 , HORVU1Hr1G061580.3 , HORVU1Hr1G061580.2 , HORVU1Hr1G061580.4 , HORVU5Hr1G058300.5 , HORVU5Hr1G058300.4 , HORVU5Hr1G058300.6 , HORVU5Hr1G058300.1 , HORVU5Hr1G058300.3 , HORVU5Hr1G058300.2 , HORVU6Hr1G074960.18 , HORVU6Hr1G074960.19 , HORVU6Hr1G074960.16 , HORVU6Hr1G074960.17 , HORVU6Hr1G074960.14 , HORVU6Hr1G074960.12 , HORVU6Hr1G074960.13 , HORVU6Hr1G074960.10 , HORVU6Hr1G074960.11
Wheat TraesCS2A02G161100 , TraesCS5B02G193100 , TraesCS2D02G168300 , TraesCS2D02G168300 , TraesCS5B02G193100 , TraesCS2D02G168200 , TraesCS2B02G187200 , TraesCS5A02G190000 , TraesCS5B02G193100 , TraesCS5D02G200800 , TraesCS2B02G187100 , TraesCS6B02G330900 , TraesCS6B02G330900 , TraesCS6B02G330900 , TraesCS2A02G161200 , TraesCS6A02G301800 , TraesCS6D02G281100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
2 Sobic.002G257300 ribulose-phosphate 3-epimerase, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
3 Sobic.010G252500 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSAUR28 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
4 Sobic.004G232400 VQ domain containing protein, putative, expressed -
5 Sobic.002G361700 expressed protein -
6 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
7 Sobic.001G389700 VQ domain containing protein, putative, expressed -
8 Sobic.004G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
9 Sobic.003G184100 auxin-induced protein 5NG4, putative, expressed -
10 Sobic.010G184800 heme oxygenase 1, putative, expressed K00510: heme oxygenase 1
11 Sobic.010G239500 ubiquitin family protein, putative, expressed K08770: ubiquitin C
12 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
13 Sobic.003G037800 transferase family protein, putative, expressed -
14 Sobic.003G343900 expressed protein -
15 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
16 Sobic.001G418900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
18 Sobic.006G136800 "shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
19 Sobic.001G416200 Responsive to hight light 41(PubMedID : 26320239)@ZOS3-09 - C2H2 zinc finger protein, expressed -
20 Sobic.004G101300 expressed protein -


Gene co-expression network
sample Sobic001G353300 Sobic001G353300 Sobic004G212300 Sobic004G212300 Sobic001G353300--Sobic004G212300 Sobic002G257300 Sobic002G257300 Sobic001G353300--Sobic002G257300 Sobic010G252500 Sobic010G252500 Sobic001G353300--Sobic010G252500 Sobic004G232400 Sobic004G232400 Sobic001G353300--Sobic004G232400 Sobic002G361700 Sobic002G361700 Sobic001G353300--Sobic002G361700 Sobic004G062500 Sobic004G062500 Sobic001G353300--Sobic004G062500 Sobic001G389700 Sobic001G389700 Sobic001G353300--Sobic001G389700 Sobic004G024100 Sobic004G024100 Sobic001G353300--Sobic004G024100 Sobic003G184100 Sobic003G184100 Sobic001G353300--Sobic003G184100 Sobic010G052200 Sobic010G052200 Sobic004G212300--Sobic010G052200 Sobic001G532200 Sobic001G532200 Sobic004G212300--Sobic001G532200 Sobic003G119500 Sobic003G119500 Sobic004G212300--Sobic003G119500 Sobic004G212300--Sobic004G062500 Sobic001G084100 Sobic001G084100 Sobic004G212300--Sobic001G084100 Sobic001G516600 Sobic001G516600 Sobic004G212300--Sobic001G516600 Sobic006G156000 Sobic006G156000 Sobic004G212300--Sobic006G156000 Sobic002G040600 Sobic002G040600 Sobic004G212300--Sobic002G040600 Sobic004G212300--Sobic010G252500 Sobic002G398901 Sobic002G398901 Sobic002G257300--Sobic002G398901 Sobic001G418900 Sobic001G418900 Sobic002G257300--Sobic001G418900 Sobic002G190900 Sobic002G190900 Sobic002G257300--Sobic002G190900 Sobic003G209000 Sobic003G209000 Sobic002G257300--Sobic003G209000 Sobic004G051700 Sobic004G051700 Sobic002G257300--Sobic004G051700 Sobic010G239500 Sobic010G239500 Sobic002G257300--Sobic010G239500 Sobic002G418400 Sobic002G418400 Sobic002G257300--Sobic002G418400 Sobic009G119900 Sobic009G119900 Sobic002G257300--Sobic009G119900 Sobic003G363800 Sobic003G363800 Sobic002G257300--Sobic003G363800 Sobic007G218800 Sobic007G218800 Sobic010G252500--Sobic007G218800 Sobic007G030501 Sobic007G030501 Sobic010G252500--Sobic007G030501 Sobic010G252500--Sobic004G062500 Sobic002G003800 Sobic002G003800 Sobic010G252500--Sobic002G003800 Sobic006G197100 Sobic006G197100 Sobic010G252500--Sobic006G197100 Sobic003G404600 Sobic003G404600 Sobic010G252500--Sobic003G404600 Sobic003G343900 Sobic003G343900 Sobic010G252500--Sobic003G343900 Sobic003G311800 Sobic003G311800 Sobic010G252500--Sobic003G311800 Sobic004G139300 Sobic004G139300 Sobic010G252500--Sobic004G139300 Sobic004G232400--Sobic010G252500 Sobic002G361200 Sobic002G361200 Sobic004G232400--Sobic002G361200 Sobic005G018700 Sobic005G018700 Sobic004G232400--Sobic005G018700 Sobic002G245100 Sobic002G245100 Sobic004G232400--Sobic002G245100 Sobic003G192100 Sobic003G192100 Sobic004G232400--Sobic003G192100 Sobic004G232400--Sobic001G353300 Sobic010G268400 Sobic010G268400 Sobic004G232400--Sobic010G268400 Sobic004G232400--Sobic001G389700 Sobic002G329000 Sobic002G329000 Sobic004G232400--Sobic002G329000 Sobic002G361700--Sobic006G156000 Sobic002G361700--Sobic001G418900 Sobic002G361700--Sobic004G212300 Sobic002G361700--Sobic002G257300 Sobic003G443300 Sobic003G443300 Sobic002G361700--Sobic003G443300 Sobic009G238900 Sobic009G238900 Sobic002G361700--Sobic009G238900 Sobic003G219800 Sobic003G219800 Sobic002G361700--Sobic003G219800 Sobic004G138800 Sobic004G138800 Sobic002G361700--Sobic004G138800 Sobic001G505500 Sobic001G505500 Sobic002G361700--Sobic001G505500 Sobic004G062500--Sobic010G252500 Sobic010G195500 Sobic010G195500 Sobic004G062500--Sobic010G195500 Sobic004G062500--Sobic004G212300 Sobic004G062500--Sobic007G218800 Sobic010G085800 Sobic010G085800 Sobic004G062500--Sobic010G085800 Sobic004G062500--Sobic003G119500 Sobic004G062500--Sobic010G268400 Sobic001G494000 Sobic001G494000 Sobic004G062500--Sobic001G494000 Sobic004G062500--Sobic003G219800 Sobic001G389700--Sobic001G532200 Sobic001G389700--Sobic003G119500 Sobic001G389700--Sobic004G212300 Sobic001G389700--Sobic002G329000 Sobic002G250000 Sobic002G250000 Sobic001G389700--Sobic002G250000 Sobic001G389700--Sobic010G252500 Sobic005G093000 Sobic005G093000 Sobic001G389700--Sobic005G093000 Sobic001G389700--Sobic001G084100 Sobic002G393400 Sobic002G393400 Sobic001G389700--Sobic002G393400 Sobic004G024100--Sobic003G404600 Sobic006G256900 Sobic006G256900 Sobic004G024100--Sobic006G256900 Sobic001G147900 Sobic001G147900 Sobic004G024100--Sobic001G147900 Sobic004G024100--Sobic006G197100 Sobic003G152200 Sobic003G152200 Sobic004G024100--Sobic003G152200 Sobic006G059700 Sobic006G059700 Sobic004G024100--Sobic006G059700 Sobic001G161000 Sobic001G161000 Sobic004G024100--Sobic001G161000 Sobic004G042000 Sobic004G042000 Sobic004G024100--Sobic004G042000 Sobic010G110800 Sobic010G110800 Sobic004G024100--Sobic010G110800 Sobic003G157600 Sobic003G157600 Sobic003G184100--Sobic003G157600 Sobic004G202400 Sobic004G202400 Sobic003G184100--Sobic004G202400 Sobic006G044100 Sobic006G044100 Sobic003G184100--Sobic006G044100 Sobic003G184100--Sobic006G197100 Sobic001G416200 Sobic001G416200 Sobic003G184100--Sobic001G416200 Sobic004G046200 Sobic004G046200 Sobic003G184100--Sobic004G046200 Sobic003G184100--Sobic004G042000 Sobic004G349125 Sobic004G349125 Sobic003G184100--Sobic004G349125 Sobic001G481400 Sobic001G481400 Sobic003G184100--Sobic001G481400
Octagon: transcription factors


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