Gene annotation
Transcriptome id Sobic.010G268400.1
Synonym Sb10g030330
Functional annotation eukaryotic aspartyl protease domain containing protein, expressed
UniProt C5Z1X3
Pfam PF00026
Panther DB PTHR13683 PTHR13683:SF232
NCBI CDD KOG1339; Aspartyl protease
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004190aspartic-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT4G35880 : Eukaryotic aspartyl protease family protein
RAP-DB (Rice) LOC_Os06g50390.1 : eukaryotic aspartyl protease domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049297 , Zm00025a018504 , Zm00025a041385
Brachypodium PNT75320 , KQJ91268 , KQJ91269 , PNT75319 , KQK16726
Barley HORVU5Hr1G084490.10 , HORVU5Hr1G084490.11 , HORVU7Hr1G118020.11 , HORVU7Hr1G118020.10 , HORVU7Hr1G118020.13 , HORVU7Hr1G118020.12 , HORVU5Hr1G084490.8 , HORVU5Hr1G084490.9 , HORVU5Hr1G084490.4 , HORVU5Hr1G084490.5 , HORVU5Hr1G084490.6 , HORVU5Hr1G084490.7 , HORVU5Hr1G084490.3 , HORVU7Hr1G118020.1 , HORVU7Hr1G118020.3 , HORVU7Hr1G118020.2 , HORVU7Hr1G118020.4 , HORVU7Hr1G118020.7 , HORVU7Hr1G118020.6 , HORVU7Hr1G118020.9 , HORVU7Hr1G118020.8 , HORVU5Hr1G084490.1 , HORVU5Hr1G084490.2 , HORVU7Hr1G118020.5
Wheat TraesCS7D02G524300 , TraesCS7A02G537200 , TraesCS5B02G334700 , TraesCS5A02G335500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G268400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G329000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-ld.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -
2 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
3 Sobic.003G192100 expressed protein -
4 Sobic.005G093000 - -
5 Sobic.001G107400 helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.003G037800 transferase family protein, putative, expressed -
7 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
8 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -
9 Sobic.010G195500 reductase, putative, expressed -
10 Sobic.003G417350 - -
11 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
12 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
13 Sobic.004G101300 expressed protein -
14 Sobic.001G206400 fiber protein Fb34, putative, expressed -
15 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
16 Sobic.009G230100 expressed protein -
17 Sobic.003G135700 - -
18 Sobic.006G131400 expressed protein -
19 Sobic.001G050100 Cupin domain containing protein, expressed -
20 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -


Gene co-expression network
sample Sobic010G268400 Sobic010G268400 Sobic002G329000 Sobic002G329000 Sobic010G268400--Sobic002G329000 Sobic001G516600 Sobic001G516600 Sobic010G268400--Sobic001G516600 Sobic003G192100 Sobic003G192100 Sobic010G268400--Sobic003G192100 Sobic005G093000 Sobic005G093000 Sobic010G268400--Sobic005G093000 Sobic001G107400 Sobic001G107400 Sobic010G268400--Sobic001G107400 Sobic003G037800 Sobic003G037800 Sobic010G268400--Sobic003G037800 Sobic002G245100 Sobic002G245100 Sobic010G268400--Sobic002G245100 Sobic003G429000 Sobic003G429000 Sobic010G268400--Sobic003G429000 Sobic010G195500 Sobic010G195500 Sobic010G268400--Sobic010G195500 Sobic002G329000--Sobic005G093000 Sobic002G329000--Sobic003G429000 Sobic002G329000--Sobic010G268400 Sobic001G389000 Sobic001G389000 Sobic002G329000--Sobic001G389000 Sobic007G155000 Sobic007G155000 Sobic002G329000--Sobic007G155000 Sobic003G417350 Sobic003G417350 Sobic002G329000--Sobic003G417350 Sobic002G329000--Sobic003G037800 Sobic001G050100 Sobic001G050100 Sobic002G329000--Sobic001G050100 Sobic002G329000--Sobic010G195500 Sobic001G173300 Sobic001G173300 Sobic001G516600--Sobic001G173300 Sobic007G151100 Sobic007G151100 Sobic001G516600--Sobic007G151100 Sobic001G516600--Sobic003G037800 Sobic003G296700 Sobic003G296700 Sobic001G516600--Sobic003G296700 Sobic001G516600--Sobic010G268400 Sobic001G532200 Sobic001G532200 Sobic001G516600--Sobic001G532200 Sobic006G131400 Sobic006G131400 Sobic001G516600--Sobic006G131400 Sobic008G177800 Sobic008G177800 Sobic001G516600--Sobic008G177800 Sobic001G516600--Sobic002G245100 Sobic005G018700 Sobic005G018700 Sobic003G192100--Sobic005G018700 Sobic004G101300 Sobic004G101300 Sobic003G192100--Sobic004G101300 Sobic003G037500 Sobic003G037500 Sobic003G192100--Sobic003G037500 Sobic003G192100--Sobic007G155000 Sobic003G192100--Sobic002G245100 Sobic001G231700 Sobic001G231700 Sobic003G192100--Sobic001G231700 Sobic003G192100--Sobic001G050100 Sobic001G367600 Sobic001G367600 Sobic003G192100--Sobic001G367600 Sobic004G340900 Sobic004G340900 Sobic003G192100--Sobic004G340900 Sobic005G093000--Sobic002G329000 Sobic005G093000--Sobic001G389000 Sobic010G136000 Sobic010G136000 Sobic005G093000--Sobic010G136000 Sobic005G093000--Sobic010G195500 Sobic005G093000--Sobic010G268400 Sobic005G093000--Sobic003G429000 Sobic005G093000--Sobic005G018700 Sobic001G500000 Sobic001G500000 Sobic005G093000--Sobic001G500000 Sobic009G074100 Sobic009G074100 Sobic005G093000--Sobic009G074100 Sobic001G107400--Sobic002G245100 Sobic004G187900 Sobic004G187900 Sobic001G107400--Sobic004G187900 Sobic001G107400--Sobic003G037800 Sobic009G141800 Sobic009G141800 Sobic001G107400--Sobic009G141800 Sobic001G107400--Sobic003G429000 Sobic001G107400--Sobic005G018700 Sobic001G281400 Sobic001G281400 Sobic001G107400--Sobic001G281400 Sobic004G321300 Sobic004G321300 Sobic001G107400--Sobic004G321300 Sobic009G159400 Sobic009G159400 Sobic001G107400--Sobic009G159400 Sobic003G037800--Sobic003G429000 Sobic003G037800--Sobic002G245100 Sobic003G037800--Sobic001G389000 Sobic009G033700 Sobic009G033700 Sobic003G037800--Sobic009G033700 Sobic003G037800--Sobic009G159400 Sobic003G037800--Sobic005G018700 Sobic006G183400 Sobic006G183400 Sobic003G037800--Sobic006G183400 Sobic003G037800--Sobic004G321300 Sobic003G037800--Sobic004G340900 Sobic002G245100--Sobic005G018700 Sobic002G245100--Sobic003G037800 Sobic004G237800 Sobic004G237800 Sobic002G245100--Sobic004G237800 Sobic002G202600 Sobic002G202600 Sobic002G245100--Sobic002G202600 Sobic005G196800 Sobic005G196800 Sobic002G245100--Sobic005G196800 Sobic002G245100--Sobic004G340900 Sobic002G245100--Sobic004G321300 Sobic003G158500 Sobic003G158500 Sobic002G245100--Sobic003G158500 Sobic002G245100--Sobic001G107400 Sobic003G429000--Sobic003G037800 Sobic003G429000--Sobic005G018700 Sobic003G429000--Sobic001G050100 Sobic003G429000--Sobic001G389000 Sobic003G429000--Sobic002G329000 Sobic003G429000--Sobic002G245100 Sobic003G429000--Sobic009G159400 Sobic007G184600 Sobic007G184600 Sobic003G429000--Sobic007G184600 Sobic002G175100 Sobic002G175100 Sobic003G429000--Sobic002G175100 Sobic010G195500--Sobic005G093000 Sobic002G312900 Sobic002G312900 Sobic010G195500--Sobic002G312900 Sobic010G195500--Sobic002G329000 Sobic010G195500--Sobic010G268400 Sobic010G008400 Sobic010G008400 Sobic010G195500--Sobic010G008400 Sobic001G147900 Sobic001G147900 Sobic010G195500--Sobic001G147900 Sobic004G062500 Sobic004G062500 Sobic010G195500--Sobic004G062500 Sobic010G239500 Sobic010G239500 Sobic010G195500--Sobic010G239500 Sobic010G195500--Sobic004G101300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.