Gene annotation
Transcriptome id Sobic.004G062500.1
Synonym 4CL.1, 4CL1, Bmr2, bmr2;Brown midrib2, Sb04g005210, AT4CL1, 4CL;4CL;brown midrib2
Functional annotation "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element" (PubMedID : 24045932)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis (PubMedID : 22313236)
4-Coumarate: Coenzyme A Ligase (4CL) (PubMedID : 22313236)
AMP-binding domain containing protein, expressed
UniProt C5XW95
Pfam PF13193 PF00501
Panther DB PTHR24096 PTHR24096:SF201
NCBI CDD -
KEGG Orthology K01904; 4-coumarate--CoA ligase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT3G21240 : 4-coumarate:CoA ligase 2
RAP-DB (Rice) LOC_Os02g08100.1 : AMP-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051700 , Zm00025a019174 , Zm00025a030940
Brachypodium KQJ95780 , KQK16898 , KQK16897 , KQJ93616
Barley HORVU7Hr1G111130.4 , HORVU7Hr1G111130.6 , HORVU7Hr1G111130.7 , HORVU7Hr1G111130.1 , HORVU7Hr1G111130.2 , HORVU7Hr1G111130.3 , HORVU6Hr1G030390.3 , HORVU6Hr1G030390.2 , HORVU6Hr1G030390.1 , HORVU6Hr1G030390.5 , HORVU6Hr1G030390.4 , HORVU7Hr1G111130.5
Wheat TraesCS6A02G151700 , TraesCS7D02G483400 , TraesCS6D02G141700 , TraesCS7A02G496200 , TraesCS6B02G179900 , TraesCS6B02G179900
Populus -


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cDNA sequences
Sobic.004G062500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G252500 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSAUR28 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
2 Sobic.010G195500 reductase, putative, expressed -
3 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
4 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
5 Sobic.010G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.003G119500 expressed protein -
7 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
8 Sobic.001G494000 Expressed in older stem(PubMedID : 28649278)@homeodomain protein, putative, expressed -
9 Sobic.003G219800 transferase family protein, putative, expressed -
10 Sobic.003G384700 pectinacetylesterase domain containing protein, expressed -
11 Sobic.007G186100 protein kinase, putative, expressed K13436: pto-interacting protein 1
12 Sobic.003G343900 expressed protein -
13 Sobic.001G040100 methylenetetrahydrofolate reductase, putative, expressed K00297: metF, methylenetetrahydrofolate reductase (NADPH)
14 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
15 Sobic.003G429200 NADPH quinone oxidoreductase, putative, expressed -
16 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
17 Sobic.010G239500 ubiquitin family protein, putative, expressed K08770: ubiquitin C
18 Sobic.005G093000 - -
19 Sobic.010G008400 bark storage protein A precursor, putative, expressed -
20 Sobic.002G320800 expressed protein -


Gene co-expression network
sample Sobic004G062500 Sobic004G062500 Sobic010G252500 Sobic010G252500 Sobic004G062500--Sobic010G252500 Sobic010G195500 Sobic010G195500 Sobic004G062500--Sobic010G195500 Sobic004G212300 Sobic004G212300 Sobic004G062500--Sobic004G212300 Sobic007G218800 Sobic007G218800 Sobic004G062500--Sobic007G218800 Sobic010G085800 Sobic010G085800 Sobic004G062500--Sobic010G085800 Sobic003G119500 Sobic003G119500 Sobic004G062500--Sobic003G119500 Sobic010G268400 Sobic010G268400 Sobic004G062500--Sobic010G268400 Sobic001G494000 Sobic001G494000 Sobic004G062500--Sobic001G494000 Sobic003G219800 Sobic003G219800 Sobic004G062500--Sobic003G219800 Sobic010G252500--Sobic007G218800 Sobic007G030501 Sobic007G030501 Sobic010G252500--Sobic007G030501 Sobic010G252500--Sobic004G062500 Sobic002G003800 Sobic002G003800 Sobic010G252500--Sobic002G003800 Sobic006G197100 Sobic006G197100 Sobic010G252500--Sobic006G197100 Sobic003G404600 Sobic003G404600 Sobic010G252500--Sobic003G404600 Sobic003G343900 Sobic003G343900 Sobic010G252500--Sobic003G343900 Sobic003G311800 Sobic003G311800 Sobic010G252500--Sobic003G311800 Sobic004G139300 Sobic004G139300 Sobic010G252500--Sobic004G139300 Sobic005G093000 Sobic005G093000 Sobic010G195500--Sobic005G093000 Sobic002G312900 Sobic002G312900 Sobic010G195500--Sobic002G312900 Sobic002G329000 Sobic002G329000 Sobic010G195500--Sobic002G329000 Sobic010G195500--Sobic010G268400 Sobic010G008400 Sobic010G008400 Sobic010G195500--Sobic010G008400 Sobic001G147900 Sobic001G147900 Sobic010G195500--Sobic001G147900 Sobic010G195500--Sobic004G062500 Sobic010G239500 Sobic010G239500 Sobic010G195500--Sobic010G239500 Sobic004G101300 Sobic004G101300 Sobic010G195500--Sobic004G101300 Sobic010G052200 Sobic010G052200 Sobic004G212300--Sobic010G052200 Sobic001G532200 Sobic001G532200 Sobic004G212300--Sobic001G532200 Sobic004G212300--Sobic003G119500 Sobic004G212300--Sobic004G062500 Sobic001G084100 Sobic001G084100 Sobic004G212300--Sobic001G084100 Sobic001G516600 Sobic001G516600 Sobic004G212300--Sobic001G516600 Sobic006G156000 Sobic006G156000 Sobic004G212300--Sobic006G156000 Sobic002G040600 Sobic002G040600 Sobic004G212300--Sobic002G040600 Sobic004G212300--Sobic010G252500 Sobic008G055100 Sobic008G055100 Sobic007G218800--Sobic008G055100 Sobic002G154600 Sobic002G154600 Sobic007G218800--Sobic002G154600 Sobic007G176000 Sobic007G176000 Sobic007G218800--Sobic007G176000 Sobic007G218800--Sobic010G252500 Sobic009G088900 Sobic009G088900 Sobic007G218800--Sobic009G088900 Sobic007G218800--Sobic003G311800 Sobic001G430100 Sobic001G430100 Sobic007G218800--Sobic001G430100 Sobic001G049900 Sobic001G049900 Sobic007G218800--Sobic001G049900 Sobic007G218800--Sobic010G085800 Sobic001G059700 Sobic001G059700 Sobic010G085800--Sobic001G059700 Sobic001G310300 Sobic001G310300 Sobic010G085800--Sobic001G310300 Sobic010G085800--Sobic010G008400 Sobic009G109000 Sobic009G109000 Sobic010G085800--Sobic009G109000 Sobic004G297900 Sobic004G297900 Sobic010G085800--Sobic004G297900 Sobic008G009400 Sobic008G009400 Sobic010G085800--Sobic008G009400 Sobic010G085800--Sobic009G088900 Sobic010G085800--Sobic003G311800 Sobic010G085800--Sobic007G218800 Sobic010G212500 Sobic010G212500 Sobic003G119500--Sobic010G212500 Sobic003G119500--Sobic003G311800 Sobic003G119500--Sobic002G003800 Sobic003G119500--Sobic009G109000 Sobic003G119500--Sobic001G049900 Sobic006G274933 Sobic006G274933 Sobic003G119500--Sobic006G274933 Sobic004G348800 Sobic004G348800 Sobic003G119500--Sobic004G348800 Sobic003G119500--Sobic004G297900 Sobic003G119500--Sobic010G085800 Sobic010G268400--Sobic002G329000 Sobic010G268400--Sobic001G516600 Sobic003G192100 Sobic003G192100 Sobic010G268400--Sobic003G192100 Sobic010G268400--Sobic005G093000 Sobic001G107400 Sobic001G107400 Sobic010G268400--Sobic001G107400 Sobic003G037800 Sobic003G037800 Sobic010G268400--Sobic003G037800 Sobic002G245100 Sobic002G245100 Sobic010G268400--Sobic002G245100 Sobic003G429000 Sobic003G429000 Sobic010G268400--Sobic003G429000 Sobic010G268400--Sobic010G195500 Sobic008G106700 Sobic008G106700 Sobic001G494000--Sobic008G106700 Sobic001G494000--Sobic003G343900 Sobic007G186100 Sobic007G186100 Sobic001G494000--Sobic007G186100 Sobic004G046200 Sobic004G046200 Sobic001G494000--Sobic004G046200 Sobic001G494000--Sobic003G219800 Sobic001G494000--Sobic010G195500 Sobic003G079400 Sobic003G079400 Sobic001G494000--Sobic003G079400 Sobic010G062100 Sobic010G062100 Sobic001G494000--Sobic010G062100 Sobic001G494000--Sobic002G003800 Sobic001G418100 Sobic001G418100 Sobic003G219800--Sobic001G418100 Sobic009G181800 Sobic009G181800 Sobic003G219800--Sobic009G181800 Sobic001G444800 Sobic001G444800 Sobic003G219800--Sobic001G444800 Sobic003G219800--Sobic006G156000 Sobic003G443300 Sobic003G443300 Sobic003G219800--Sobic003G443300 Sobic001G040100 Sobic001G040100 Sobic003G219800--Sobic001G040100 Sobic005G112800 Sobic005G112800 Sobic003G219800--Sobic005G112800 Sobic005G113300 Sobic005G113300 Sobic003G219800--Sobic005G113300 Sobic009G238900 Sobic009G238900 Sobic003G219800--Sobic009G238900
Octagon: transcription factors


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