Gene annotation
Transcriptome id Sobic.003G384700.3,Sobic.003G384700.2
Synonym
Functional annotation pectinacetylesterase domain containing protein, expressed
UniProt A0A1B6Q7I0 , A0A1W0W0W5
Pfam PF03283
Panther DB PTHR21562 PTHR21562:SF19
NCBI CDD KOG4287; Pectin acetylesterase and similar proteins
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT3G09410 : Pectinacetylesterase family protein
RAP-DB (Rice) LOC_Os01g66850.1,LOC_Os01g66830.1 : pectinacetylesterase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026476
Brachypodium KQK19774
Barley HORVU7Hr1G006900.1
Wheat TraesCS7D02G035800 , TraesCS7A02G040500 , TraesCS3D02G538900 , TraesCS3D02G538900 , TraesCS3D02G538900 , TraesCS3D02G538900 , TraesCS1D02G034900 , TraesCS1B02G042000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G122800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
2 Sobic.003G157600 expressed protein -
3 Sobic.005G063400 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
4 Sobic.001G147900 cytochrome P450, putative, expressed -
5 Sobic.002G042200 gibberellin receptor GID1L2, putative, expressed -
6 Sobic.010G161800 peroxidase precursor, putative, expressed K00430: peroxidase
7 Sobic.005G080400 1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
8 Sobic.003G351600 expressed protein -
9 Sobic.005G203200 cysteine-rich receptor-like protein kinase 21 precursor, putative, expressed -
10 Sobic.006G197100 DNA binding protein, putative, expressed -
11 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.007G030501 - -
13 Sobic.001G360400 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.003G368600 terpene synthase, putative, expressed -
15 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
16 Sobic.004G009500 transporter, major facilitator family, putative, expressed K02575: NRT, narK, nrtP, MFS transporter, NNP family, nitrate/nitrite transporter
17 Sobic.003G152200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.006G256900 dirigent-like protein pDIR17, putative, expressed -
19 Sobic.007G050200 DNA binding protein, putative, expressed -
20 Sobic.005G037200 transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic003G384700 Sobic003G384700 Sobic006G122800 Sobic006G122800 Sobic003G384700--Sobic006G122800 Sobic003G157600 Sobic003G157600 Sobic003G384700--Sobic003G157600 Sobic005G063400 Sobic005G063400 Sobic003G384700--Sobic005G063400 Sobic001G147900 Sobic001G147900 Sobic003G384700--Sobic001G147900 Sobic002G042200 Sobic002G042200 Sobic003G384700--Sobic002G042200 Sobic010G161800 Sobic010G161800 Sobic003G384700--Sobic010G161800 Sobic005G080400 Sobic005G080400 Sobic003G384700--Sobic005G080400 Sobic003G351600 Sobic003G351600 Sobic003G384700--Sobic003G351600 Sobic005G203200 Sobic005G203200 Sobic003G384700--Sobic005G203200 Sobic006G122800--Sobic003G384700 Sobic006G122800--Sobic002G042200 Sobic002G425000 Sobic002G425000 Sobic006G122800--Sobic002G425000 Sobic002G053700 Sobic002G053700 Sobic006G122800--Sobic002G053700 Sobic006G122800--Sobic005G063400 Sobic006G122800--Sobic010G161800 Sobic006G260200 Sobic006G260200 Sobic006G122800--Sobic006G260200 Sobic006G174300 Sobic006G174300 Sobic006G122800--Sobic006G174300 Sobic006G251400 Sobic006G251400 Sobic006G122800--Sobic006G251400 Sobic004G202400 Sobic004G202400 Sobic003G157600--Sobic004G202400 Sobic003G157600--Sobic002G042200 Sobic006G197100 Sobic006G197100 Sobic003G157600--Sobic006G197100 Sobic003G184100 Sobic003G184100 Sobic003G157600--Sobic003G184100 Sobic003G157600--Sobic003G384700 Sobic001G416200 Sobic001G416200 Sobic003G157600--Sobic001G416200 Sobic002G261500 Sobic002G261500 Sobic003G157600--Sobic002G261500 Sobic003G157600--Sobic006G122800 Sobic004G349125 Sobic004G349125 Sobic003G157600--Sobic004G349125 Sobic003G053600 Sobic003G053600 Sobic005G063400--Sobic003G053600 Sobic005G063400--Sobic002G053700 Sobic004G009400 Sobic004G009400 Sobic005G063400--Sobic004G009400 Sobic007G057400 Sobic007G057400 Sobic005G063400--Sobic007G057400 Sobic005G063400--Sobic006G122800 Sobic002G101400 Sobic002G101400 Sobic005G063400--Sobic002G101400 Sobic006G277700 Sobic006G277700 Sobic005G063400--Sobic006G277700 Sobic009G088500 Sobic009G088500 Sobic005G063400--Sobic009G088500 Sobic005G063400--Sobic006G174300 Sobic003G368600 Sobic003G368600 Sobic001G147900--Sobic003G368600 Sobic001G147900--Sobic006G197100 Sobic003G404600 Sobic003G404600 Sobic001G147900--Sobic003G404600 Sobic006G243600 Sobic006G243600 Sobic001G147900--Sobic006G243600 Sobic002G003800 Sobic002G003800 Sobic001G147900--Sobic002G003800 Sobic003G152200 Sobic003G152200 Sobic001G147900--Sobic003G152200 Sobic006G256900 Sobic006G256900 Sobic001G147900--Sobic006G256900 Sobic004G348400 Sobic004G348400 Sobic001G147900--Sobic004G348400 Sobic006G059700 Sobic006G059700 Sobic001G147900--Sobic006G059700 Sobic002G042200--Sobic006G197100 Sobic004G139300 Sobic004G139300 Sobic002G042200--Sobic004G139300 Sobic002G042200--Sobic002G261500 Sobic005G065900 Sobic005G065900 Sobic002G042200--Sobic005G065900 Sobic010G148800 Sobic010G148800 Sobic002G042200--Sobic010G148800 Sobic002G042200--Sobic004G202400 Sobic002G042200--Sobic003G157600 Sobic002G042200--Sobic006G251400 Sobic004G209400 Sobic004G209400 Sobic002G042200--Sobic004G209400 Sobic010G161800--Sobic006G122800 Sobic010G161800--Sobic002G425000 Sobic010G161800--Sobic005G063400 Sobic010G161800--Sobic006G260200 Sobic010G161800--Sobic002G053700 Sobic010G161800--Sobic003G384700 Sobic005G072900 Sobic005G072900 Sobic010G161800--Sobic005G072900 Sobic010G161800--Sobic006G174300 Sobic007G050200 Sobic007G050200 Sobic010G161800--Sobic007G050200 Sobic005G080400--Sobic005G203200 Sobic002G228800 Sobic002G228800 Sobic005G080400--Sobic002G228800 Sobic004G038700 Sobic004G038700 Sobic005G080400--Sobic004G038700 Sobic005G202700 Sobic005G202700 Sobic005G080400--Sobic005G202700 Sobic005G080400--Sobic007G057400 Sobic009G035300 Sobic009G035300 Sobic005G080400--Sobic009G035300 Sobic002G326500 Sobic002G326500 Sobic005G080400--Sobic002G326500 Sobic005G080400--Sobic003G351600 Sobic005G166700 Sobic005G166700 Sobic005G080400--Sobic005G166700 Sobic003G351600--Sobic002G042200 Sobic003G351600--Sobic007G050200 Sobic003G351600--Sobic004G139300 Sobic003G351600--Sobic006G256900 Sobic001G058300 Sobic001G058300 Sobic003G351600--Sobic001G058300 Sobic010G113100 Sobic010G113100 Sobic003G351600--Sobic010G113100 Sobic004G322100 Sobic004G322100 Sobic003G351600--Sobic004G322100 Sobic002G216100 Sobic002G216100 Sobic003G351600--Sobic002G216100 Sobic003G351600--Sobic002G101400 Sobic005G203200--Sobic005G080400 Sobic004G011100 Sobic004G011100 Sobic005G203200--Sobic004G011100 Sobic005G203200--Sobic005G202700 Sobic005G203200--Sobic003G384700 Sobic005G203200--Sobic001G147900 Sobic001G360400 Sobic001G360400 Sobic005G203200--Sobic001G360400 Sobic007G030501 Sobic007G030501 Sobic005G203200--Sobic007G030501 Sobic003G140600 Sobic003G140600 Sobic005G203200--Sobic003G140600 Sobic005G203200--Sobic004G038700
Octagon: transcription factors


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