Gene annotation
Transcriptome id Sobic.005G080400.1
Synonym Sb05g006570
Functional annotation 1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed
UniProt C5Y7A6
Pfam PF03171 PF14226
Panther DB PTHR10209 PTHR10209:SF178
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G17020 : senescence-related gene 1
RAP-DB (Rice) LOC_Os03g63900.1 : 1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed
MaizeGDB (Corn) Zm00025a039721
Brachypodium KQJ97779 , KQK20713
Barley HORVU3Hr1G091210.2 , HORVU3Hr1G091210.3 , HORVU3Hr1G091210.1
Wheat TraesCS6D02G213100 , TraesCS4A02G033200 , TraesCS3B02G440500 , TraesCS3A02G407900 , TraesCS4B02G374100 , TraesCS6A02G221900 , TraesCS5A02G539900 , TraesCS4B02G272100 , TraesCS6B02G259200 , TraesCS4B02G374100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G203200 cysteine-rich receptor-like protein kinase 21 precursor, putative, expressed -
2 Sobic.002G228800 expressed protein -
3 Sobic.004G038700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR5 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
4 Sobic.005G202700 tropinone reductase 2, putative, expressed K08081: tropinone reductase I
5 Sobic.007G057400 - -
6 Sobic.009G035300 expressed protein -
7 Sobic.002G326500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@TKL_IRAK_DUF26-la.4 - DUF26 kinases have homology to DUF26 containing loci, expressed -
8 Sobic.003G351600 expressed protein -
9 Sobic.005G166700 sulfotransferase domain containing protein, expressed -
10 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.003G384700 pectinacetylesterase domain containing protein, expressed -
12 Sobic.001G058300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein At4g06744 precursor, putative, expressed -
13 Sobic.007G050200 DNA binding protein, putative, expressed -
14 Sobic.005G063400 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
15 Sobic.010G113100 cytokinin-O-glucosyltransferase 2, putative, expressed -
16 Sobic.002G154600 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
17 Sobic.002G101400 erythronate-4-phosphate dehydrogenase domain containing protein, expressed -
18 Sobic.005G061200 dirigent, putative, expressed -
19 Sobic.003G399600 LTPL38 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.001G301300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic005G080400 Sobic005G080400 Sobic005G203200 Sobic005G203200 Sobic005G080400--Sobic005G203200 Sobic002G228800 Sobic002G228800 Sobic005G080400--Sobic002G228800 Sobic004G038700 Sobic004G038700 Sobic005G080400--Sobic004G038700 Sobic005G202700 Sobic005G202700 Sobic005G080400--Sobic005G202700 Sobic007G057400 Sobic007G057400 Sobic005G080400--Sobic007G057400 Sobic009G035300 Sobic009G035300 Sobic005G080400--Sobic009G035300 Sobic002G326500 Sobic002G326500 Sobic005G080400--Sobic002G326500 Sobic003G351600 Sobic003G351600 Sobic005G080400--Sobic003G351600 Sobic005G166700 Sobic005G166700 Sobic005G080400--Sobic005G166700 Sobic005G203200--Sobic005G080400 Sobic004G011100 Sobic004G011100 Sobic005G203200--Sobic004G011100 Sobic005G203200--Sobic005G202700 Sobic003G384700 Sobic003G384700 Sobic005G203200--Sobic003G384700 Sobic001G147900 Sobic001G147900 Sobic005G203200--Sobic001G147900 Sobic001G360400 Sobic001G360400 Sobic005G203200--Sobic001G360400 Sobic007G030501 Sobic007G030501 Sobic005G203200--Sobic007G030501 Sobic003G140600 Sobic003G140600 Sobic005G203200--Sobic003G140600 Sobic005G203200--Sobic004G038700 Sobic002G228800--Sobic005G080400 Sobic001G058300 Sobic001G058300 Sobic002G228800--Sobic001G058300 Sobic007G021900 Sobic007G021900 Sobic002G228800--Sobic007G021900 Sobic001G232200 Sobic001G232200 Sobic002G228800--Sobic001G232200 Sobic006G003600 Sobic006G003600 Sobic002G228800--Sobic006G003600 Sobic003G000100 Sobic003G000100 Sobic002G228800--Sobic003G000100 Sobic002G228800--Sobic003G351600 Sobic002G228800--Sobic005G166700 Sobic002G216100 Sobic002G216100 Sobic002G228800--Sobic002G216100 Sobic004G038700--Sobic003G140600 Sobic005G010100 Sobic005G010100 Sobic004G038700--Sobic005G010100 Sobic003G228600 Sobic003G228600 Sobic004G038700--Sobic003G228600 Sobic003G203600 Sobic003G203600 Sobic004G038700--Sobic003G203600 Sobic001G238000 Sobic001G238000 Sobic004G038700--Sobic001G238000 Sobic001G238200 Sobic001G238200 Sobic004G038700--Sobic001G238200 Sobic004G038700--Sobic005G080400 Sobic004G110700 Sobic004G110700 Sobic004G038700--Sobic004G110700 Sobic010G234500 Sobic010G234500 Sobic004G038700--Sobic010G234500 Sobic005G202700--Sobic005G080400 Sobic005G202700--Sobic005G203200 Sobic006G150700 Sobic006G150700 Sobic005G202700--Sobic006G150700 Sobic005G202700--Sobic004G011100 Sobic005G073000 Sobic005G073000 Sobic005G202700--Sobic005G073000 Sobic005G202700--Sobic009G035300 Sobic002G250000 Sobic002G250000 Sobic005G202700--Sobic002G250000 Sobic009G088900 Sobic009G088900 Sobic005G202700--Sobic009G088900 Sobic005G202700--Sobic002G326500 Sobic001G360500 Sobic001G360500 Sobic007G057400--Sobic001G360500 Sobic010G113100 Sobic010G113100 Sobic007G057400--Sobic010G113100 Sobic003G053600 Sobic003G053600 Sobic007G057400--Sobic003G053600 Sobic009G088500 Sobic009G088500 Sobic007G057400--Sobic009G088500 Sobic002G101400 Sobic002G101400 Sobic007G057400--Sobic002G101400 Sobic005G063400 Sobic005G063400 Sobic007G057400--Sobic005G063400 Sobic007G057400--Sobic006G003600 Sobic006G092700 Sobic006G092700 Sobic007G057400--Sobic006G092700 Sobic008G164450 Sobic008G164450 Sobic007G057400--Sobic008G164450 Sobic001G264000 Sobic001G264000 Sobic009G035300--Sobic001G264000 Sobic004G042000 Sobic004G042000 Sobic009G035300--Sobic004G042000 Sobic001G416200 Sobic001G416200 Sobic009G035300--Sobic001G416200 Sobic001G161500 Sobic001G161500 Sobic009G035300--Sobic001G161500 Sobic004G349125 Sobic004G349125 Sobic009G035300--Sobic004G349125 Sobic001G302600 Sobic001G302600 Sobic009G035300--Sobic001G302600 Sobic006G197100 Sobic006G197100 Sobic009G035300--Sobic006G197100 Sobic001G304201 Sobic001G304201 Sobic009G035300--Sobic001G304201 Sobic002G003800 Sobic002G003800 Sobic009G035300--Sobic002G003800 Sobic003G399600 Sobic003G399600 Sobic002G326500--Sobic003G399600 Sobic008G016000 Sobic008G016000 Sobic002G326500--Sobic008G016000 Sobic002G326500--Sobic001G304201 Sobic002G326500--Sobic002G003800 Sobic002G185800 Sobic002G185800 Sobic002G326500--Sobic002G185800 Sobic006G172500 Sobic006G172500 Sobic002G326500--Sobic006G172500 Sobic003G140700 Sobic003G140700 Sobic002G326500--Sobic003G140700 Sobic002G326500--Sobic009G035300 Sobic002G326500--Sobic005G080400 Sobic002G042200 Sobic002G042200 Sobic003G351600--Sobic002G042200 Sobic007G050200 Sobic007G050200 Sobic003G351600--Sobic007G050200 Sobic004G139300 Sobic004G139300 Sobic003G351600--Sobic004G139300 Sobic006G256900 Sobic006G256900 Sobic003G351600--Sobic006G256900 Sobic003G351600--Sobic001G058300 Sobic003G351600--Sobic010G113100 Sobic004G322100 Sobic004G322100 Sobic003G351600--Sobic004G322100 Sobic003G351600--Sobic002G216100 Sobic003G351600--Sobic002G101400 Sobic005G166700--Sobic001G232200 Sobic007G008600 Sobic007G008600 Sobic005G166700--Sobic007G008600 Sobic009G150500 Sobic009G150500 Sobic005G166700--Sobic009G150500 Sobic003G280000 Sobic003G280000 Sobic005G166700--Sobic003G280000 Sobic006G106900 Sobic006G106900 Sobic005G166700--Sobic006G106900 Sobic003G353200 Sobic003G353200 Sobic005G166700--Sobic003G353200 Sobic006G103300 Sobic006G103300 Sobic005G166700--Sobic006G103300 Sobic003G257400 Sobic003G257400 Sobic005G166700--Sobic003G257400 Sobic005G202300 Sobic005G202300 Sobic005G166700--Sobic005G202300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.