Gene annotation
Transcriptome id Sobic.001G301300.1
Synonym ATEXPB2, EXPB2, Sb01g029310, ATHEXPBETA1.4
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expansin precursor, putative, expressed
UniProt C5WSF6
Pfam PF03330 PF01357
Panther DB PTHR31692 PTHR31692:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65680 : expansin B2
RAP-DB (Rice) LOC_Os10g40700.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051983 , Zm00025a051980 , Zm00025a051981 , Zm00025a032217 , Zm00025a051976 , Zm00025a051986 , Zm00025a003327 , Zm00025a021677 , Zm00025a021679 , Zm00025a021678 , Zm00025a003339 , Zm00025a003331 , Zm00025a000113 , Zm00025a021680 , Zm00025a021681 , Zm00025a020874
Brachypodium KQJ97766 , KQJ97763 , KQJ97762 , KQJ92002 , KQK24134
Barley HORVU4Hr1G088080.5 , HORVU5Hr1G019100.10 , HORVU4Hr1G088080.8 , HORVU4Hr1G088080.9 , HORVU4Hr1G088080.2 , HORVU4Hr1G088080.3 , HORVU4Hr1G088080.7 , HORVU4Hr1G088080.4 , HORVU5Hr1G019100.8 , HORVU5Hr1G019100.9 , HORVU5Hr1G019100.3 , HORVU5Hr1G019100.4 , HORVU5Hr1G019100.5 , HORVU5Hr1G019100.6 , HORVU5Hr1G019100.7 , HORVU4Hr1G088140.3 , HORVU4Hr1G088140.2 , HORVU4Hr1G088140.1 , HORVU4Hr1G088080.10 , HORVU4Hr1G088080.11 , HORVU4Hr1G088080.12 , HORVU4Hr1G088080.13 , HORVU3Hr1G105520.2 , HORVU3Hr1G105520.1 , HORVU5Hr1G019100.12 , HORVU5Hr1G019100.11 , HORVU5Hr1G019100.1
Wheat TraesCS1D02G215400 , TraesCS5D02G086000 , TraesCS1D02G215100 , TraesCS5B02G079400 , TraesCS3B02G524500 , TraesCS3D02G474800 , TraesCS3A02G480000 , TraesCS3D02G000500 , TraesCS1D02G215100 , TraesCS3B02G014300 , TraesCS4D02G361700 , TraesCS5A02G538000 , TraesCS1B02G225700 , TraesCS1B02G225700 , TraesCS5A02G537300 , TraesCS3D02G476800 , TraesCS1A02G212000 , TraesCS5A02G073100 , TraesCS1A02G212400 , TraesCS3A02G011100 , TraesCS6B02G245700 , TraesCS3A02G479900 , TraesCS4B02G375200 , TraesCS4B02G375600 , TraesCS3B02G526800 , TraesCS4D02G361900
Populus -


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cDNA sequences
Sobic.001G301300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G053700 auxin-induced protein 5NG4, putative, expressed -
2 Sobic.001G238200 expansin precursor, putative, expressed -
3 Sobic.001G058300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein At4g06744 precursor, putative, expressed -
4 Sobic.005G063400 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
5 Sobic.002G377700 caltractin, putative, expressed -
6 Sobic.006G172601 - -
7 Sobic.001G238300 expansin precursor, putative, expressed -
8 Sobic.006G122800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
9 Sobic.007G057400 - -
10 Sobic.009G088500 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
12 Sobic.005G080400 1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
13 Sobic.005G072900 stress responsive protein, putative, expressed -
14 Sobic.004G306900 amino acid transporter, putative, expressed -
15 Sobic.001G238000 expansin precursor, putative, expressed -
16 Sobic.005G202200 integral membrane protein, putative, expressed -
17 Sobic.006G174300 cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase
18 Sobic.007G050200 DNA binding protein, putative, expressed -
19 Sobic.002G228800 expressed protein -
20 Sobic.003G319400 receptor protein kinase, putative, expressed -


Gene co-expression network
sample Sobic001G301300 Sobic001G301300 Sobic002G053700 Sobic002G053700 Sobic001G301300--Sobic002G053700 Sobic001G238200 Sobic001G238200 Sobic001G301300--Sobic001G238200 Sobic001G058300 Sobic001G058300 Sobic001G301300--Sobic001G058300 Sobic005G063400 Sobic005G063400 Sobic001G301300--Sobic005G063400 Sobic002G377700 Sobic002G377700 Sobic001G301300--Sobic002G377700 Sobic006G172601 Sobic006G172601 Sobic001G301300--Sobic006G172601 Sobic001G238300 Sobic001G238300 Sobic001G301300--Sobic001G238300 Sobic006G122800 Sobic006G122800 Sobic001G301300--Sobic006G122800 Sobic007G057400 Sobic007G057400 Sobic001G301300--Sobic007G057400 Sobic006G277700 Sobic006G277700 Sobic002G053700--Sobic006G277700 Sobic002G053700--Sobic005G063400 Sobic003G053600 Sobic003G053600 Sobic002G053700--Sobic003G053600 Sobic001G379400 Sobic001G379400 Sobic002G053700--Sobic001G379400 Sobic002G053700--Sobic006G122800 Sobic002G053700--Sobic001G301300 Sobic006G174300 Sobic006G174300 Sobic002G053700--Sobic006G174300 Sobic002G050300 Sobic002G050300 Sobic002G053700--Sobic002G050300 Sobic004G009400 Sobic004G009400 Sobic002G053700--Sobic004G009400 Sobic003G064800 Sobic003G064800 Sobic001G238200--Sobic003G064800 Sobic003G140700 Sobic003G140700 Sobic001G238200--Sobic003G140700 Sobic002G255000 Sobic002G255000 Sobic001G238200--Sobic002G255000 Sobic004G306900 Sobic004G306900 Sobic001G238200--Sobic004G306900 Sobic001G238000 Sobic001G238000 Sobic001G238200--Sobic001G238000 Sobic010G234500 Sobic010G234500 Sobic001G238200--Sobic010G234500 Sobic006G106900 Sobic006G106900 Sobic001G238200--Sobic006G106900 Sobic001G238200--Sobic001G058300 Sobic004G323300 Sobic004G323300 Sobic001G238200--Sobic004G323300 Sobic001G058300--Sobic001G238200 Sobic001G438200 Sobic001G438200 Sobic001G058300--Sobic001G438200 Sobic001G058300--Sobic003G140700 Sobic003G319400 Sobic003G319400 Sobic001G058300--Sobic003G319400 Sobic001G058300--Sobic004G306900 Sobic005G202300 Sobic005G202300 Sobic001G058300--Sobic005G202300 Sobic003G282200 Sobic003G282200 Sobic001G058300--Sobic003G282200 Sobic001G058300--Sobic006G106900 Sobic001G058300--Sobic006G174300 Sobic005G063400--Sobic003G053600 Sobic005G063400--Sobic002G053700 Sobic005G063400--Sobic004G009400 Sobic005G063400--Sobic007G057400 Sobic005G063400--Sobic006G122800 Sobic002G101400 Sobic002G101400 Sobic005G063400--Sobic002G101400 Sobic005G063400--Sobic006G277700 Sobic009G088500 Sobic009G088500 Sobic005G063400--Sobic009G088500 Sobic005G063400--Sobic006G174300 Sobic002G377700--Sobic001G238000 Sobic002G377700--Sobic001G238200 Sobic002G377700--Sobic006G174300 Sobic002G377700--Sobic001G058300 Sobic010G162800 Sobic010G162800 Sobic002G377700--Sobic010G162800 Sobic002G377700--Sobic003G319400 Sobic009G219200 Sobic009G219200 Sobic002G377700--Sobic009G219200 Sobic002G377700--Sobic004G306900 Sobic006G079300 Sobic006G079300 Sobic002G377700--Sobic006G079300 Sobic006G172601--Sobic001G238300 Sobic007G090469 Sobic007G090469 Sobic006G172601--Sobic007G090469 Sobic006G172601--Sobic001G238200 Sobic006G172550 Sobic006G172550 Sobic006G172601--Sobic006G172550 Sobic006G225500 Sobic006G225500 Sobic006G172601--Sobic006G225500 Sobic004G297900 Sobic004G297900 Sobic006G172601--Sobic004G297900 Sobic002G261500 Sobic002G261500 Sobic006G172601--Sobic002G261500 Sobic001G300500 Sobic001G300500 Sobic006G172601--Sobic001G300500 Sobic006G172601--Sobic003G140700 Sobic001G238300--Sobic006G172601 Sobic001G238300--Sobic002G261500 Sobic001G238300--Sobic004G297900 Sobic002G425000 Sobic002G425000 Sobic001G238300--Sobic002G425000 Sobic001G238300--Sobic007G090469 SobicK026900 SobicK026900 Sobic001G238300--SobicK026900 Sobic006G260200 Sobic006G260200 Sobic001G238300--Sobic006G260200 Sobic007G050200 Sobic007G050200 Sobic001G238300--Sobic007G050200 Sobic001G238300--Sobic003G140700 Sobic003G384700 Sobic003G384700 Sobic006G122800--Sobic003G384700 Sobic002G042200 Sobic002G042200 Sobic006G122800--Sobic002G042200 Sobic006G122800--Sobic002G425000 Sobic006G122800--Sobic002G053700 Sobic006G122800--Sobic005G063400 Sobic010G161800 Sobic010G161800 Sobic006G122800--Sobic010G161800 Sobic006G122800--Sobic006G260200 Sobic006G122800--Sobic006G174300 Sobic006G251400 Sobic006G251400 Sobic006G122800--Sobic006G251400 Sobic001G360500 Sobic001G360500 Sobic007G057400--Sobic001G360500 Sobic010G113100 Sobic010G113100 Sobic007G057400--Sobic010G113100 Sobic007G057400--Sobic003G053600 Sobic007G057400--Sobic009G088500 Sobic007G057400--Sobic002G101400 Sobic007G057400--Sobic005G063400 Sobic006G003600 Sobic006G003600 Sobic007G057400--Sobic006G003600 Sobic006G092700 Sobic006G092700 Sobic007G057400--Sobic006G092700 Sobic008G164450 Sobic008G164450 Sobic007G057400--Sobic008G164450
Octagon: transcription factors


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