Gene annotation
Transcriptome id Sobic.006G156000.1
Synonym FTRA2, Sb06g023310
Functional annotation ferredoxin-thioredoxin reductase, variable chain, putative, expressed
UniProt A0A1B6PM70
Pfam PF02941
Panther DB PTHR10949 PTHR10949:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015979; photosynthesis GO:0016992lipoate synthase activity GO:0009107lipoate biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G08410 : ferredoxin/thioredoxin reductase subunit A (variable subunit) 2
RAP-DB (Rice) LOC_Os04g44650.1 : ferredoxin-thioredoxin reductase, variable chain, putative, expressed
MaizeGDB (Corn) Zm00025a010475
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
2 Sobic.001G432000 LYR motif containing protein, putative, expressed -
3 Sobic.005G168100 ADP-ribosylation factor, putative, expressed K07950: ADP-ribosylation factor-like protein 5B
4 Sobic.003G219800 transferase family protein, putative, expressed -
5 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
6 Sobic.001G304400 expressed protein -
7 Sobic.009G212200 expressed protein -
8 Sobic.002G361700 expressed protein -
9 Sobic.001G040100 methylenetetrahydrofolate reductase, putative, expressed K00297: metF, methylenetetrahydrofolate reductase (NADPH)
10 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
11 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
12 Sobic.002G128800 fiber protein Fb34, putative, expressed -
13 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
14 Sobic.002G320800 expressed protein -
15 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
16 Sobic.001G418900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
18 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
19 Sobic.005G112800 erythronate-4-phosphate dehydrogenase, putative, expressed K01251: E3.3.1.1, adenosylhomocysteinase
20 Sobic.010G052200 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S-adenosyl methionine (SAM)-dependent O-methyltransferase(PubMedID : 30289910)@enzyme involved in monolignol synthesis(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase(PubMedID : 27457122)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase


Gene co-expression network
sample Sobic006G156000 Sobic006G156000 Sobic003G443300 Sobic003G443300 Sobic006G156000--Sobic003G443300 Sobic001G432000 Sobic001G432000 Sobic006G156000--Sobic001G432000 Sobic005G168100 Sobic005G168100 Sobic006G156000--Sobic005G168100 Sobic003G219800 Sobic003G219800 Sobic006G156000--Sobic003G219800 Sobic001G084100 Sobic001G084100 Sobic006G156000--Sobic001G084100 Sobic001G304400 Sobic001G304400 Sobic006G156000--Sobic001G304400 Sobic009G212200 Sobic009G212200 Sobic006G156000--Sobic009G212200 Sobic002G361700 Sobic002G361700 Sobic006G156000--Sobic002G361700 Sobic001G040100 Sobic001G040100 Sobic006G156000--Sobic001G040100 Sobic003G443300--Sobic001G304400 Sobic001G418900 Sobic001G418900 Sobic003G443300--Sobic001G418900 Sobic001G483100 Sobic001G483100 Sobic003G443300--Sobic001G483100 Sobic001G085400 Sobic001G085400 Sobic003G443300--Sobic001G085400 Sobic006G216600 Sobic006G216600 Sobic003G443300--Sobic006G216600 Sobic003G443300--Sobic006G156000 Sobic003G443300--Sobic009G212200 Sobic003G249700 Sobic003G249700 Sobic003G443300--Sobic003G249700 Sobic003G443300--Sobic003G219800 Sobic010G251600 Sobic010G251600 Sobic001G432000--Sobic010G251600 Sobic001G432000--Sobic005G168100 Sobic001G432000--Sobic001G304400 Sobic009G232900 Sobic009G232900 Sobic001G432000--Sobic009G232900 Sobic007G019400 Sobic007G019400 Sobic001G432000--Sobic007G019400 Sobic003G150000 Sobic003G150000 Sobic001G432000--Sobic003G150000 Sobic001G054900 Sobic001G054900 Sobic001G432000--Sobic001G054900 Sobic010G206200 Sobic010G206200 Sobic001G432000--Sobic010G206200 Sobic001G432000--Sobic006G156000 Sobic005G168100--Sobic009G232900 Sobic005G168100--Sobic001G432000 Sobic005G168100--Sobic006G156000 Sobic003G155400 Sobic003G155400 Sobic005G168100--Sobic003G155400 Sobic003G209000 Sobic003G209000 Sobic005G168100--Sobic003G209000 Sobic002G296200 Sobic002G296200 Sobic005G168100--Sobic002G296200 Sobic002G418400 Sobic002G418400 Sobic005G168100--Sobic002G418400 Sobic003G215700 Sobic003G215700 Sobic005G168100--Sobic003G215700 Sobic005G168100--Sobic003G150000 Sobic001G418100 Sobic001G418100 Sobic003G219800--Sobic001G418100 Sobic009G181800 Sobic009G181800 Sobic003G219800--Sobic009G181800 Sobic001G444800 Sobic001G444800 Sobic003G219800--Sobic001G444800 Sobic003G219800--Sobic006G156000 Sobic003G219800--Sobic003G443300 Sobic003G219800--Sobic001G040100 Sobic005G112800 Sobic005G112800 Sobic003G219800--Sobic005G112800 Sobic005G113300 Sobic005G113300 Sobic003G219800--Sobic005G113300 Sobic009G238900 Sobic009G238900 Sobic003G219800--Sobic009G238900 Sobic001G532200 Sobic001G532200 Sobic001G084100--Sobic001G532200 Sobic001G173300 Sobic001G173300 Sobic001G084100--Sobic001G173300 Sobic001G084100--Sobic006G156000 Sobic010G052200 Sobic010G052200 Sobic001G084100--Sobic010G052200 Sobic001G084100--Sobic005G168100 Sobic004G212300 Sobic004G212300 Sobic001G084100--Sobic004G212300 Sobic003G119500 Sobic003G119500 Sobic001G084100--Sobic003G119500 Sobic001G084100--Sobic003G219800 Sobic001G084100--Sobic001G418100 Sobic001G304400--Sobic003G443300 Sobic001G304400--Sobic001G432000 Sobic001G286200 Sobic001G286200 Sobic001G304400--Sobic001G286200 Sobic001G304400--Sobic003G249700 Sobic001G304400--Sobic009G212200 Sobic001G304400--Sobic007G019400 Sobic002G304900 Sobic002G304900 Sobic001G304400--Sobic002G304900 Sobic001G304400--Sobic003G150000 Sobic009G062000 Sobic009G062000 Sobic001G304400--Sobic009G062000 Sobic009G212200--Sobic001G286200 Sobic009G212200--Sobic003G215700 Sobic009G212200--Sobic001G304400 Sobic009G212200--Sobic003G443300 Sobic002G356400 Sobic002G356400 Sobic009G212200--Sobic002G356400 Sobic010G264300 Sobic010G264300 Sobic009G212200--Sobic010G264300 Sobic001G134400 Sobic001G134400 Sobic009G212200--Sobic001G134400 Sobic009G212200--Sobic003G249700 Sobic009G076400 Sobic009G076400 Sobic009G212200--Sobic009G076400 Sobic002G361700--Sobic006G156000 Sobic002G361700--Sobic001G418900 Sobic002G361700--Sobic004G212300 Sobic002G257300 Sobic002G257300 Sobic002G361700--Sobic002G257300 Sobic002G361700--Sobic003G443300 Sobic002G361700--Sobic009G238900 Sobic002G361700--Sobic003G219800 Sobic004G138800 Sobic004G138800 Sobic002G361700--Sobic004G138800 Sobic001G505500 Sobic001G505500 Sobic002G361700--Sobic001G505500 Sobic001G040100--Sobic005G112800 Sobic001G040100--Sobic003G219800 Sobic001G040100--Sobic002G356400 Sobic001G040100--Sobic003G209000 Sobic003G151600 Sobic003G151600 Sobic001G040100--Sobic003G151600 Sobic003G410500 Sobic003G410500 Sobic001G040100--Sobic003G410500 Sobic001G040100--Sobic006G156000 Sobic001G040100--Sobic002G418400 Sobic001G040100--Sobic002G257300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.