Gene annotation
Transcriptome id Sobic.001G432000.1
Synonym Sb01g040640
Functional annotation LYR motif containing protein, putative, expressed
UniProt C5WQT8
Pfam PF05347
Panther DB PTHR13166 PTHR13166:SF7
NCBI CDD KOG3801; Uncharacterized conserved protein BCN92
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G61220 : LYR family of Fe/S cluster biogenesis protein
RAP-DB (Rice) LOC_Os08g14070.1 : LYR motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a001670 , Zm00025a052834
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
2 Sobic.005G168100 ADP-ribosylation factor, putative, expressed K07950: ADP-ribosylation factor-like protein 5B
3 Sobic.001G304400 expressed protein -
4 Sobic.009G232900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
5 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
6 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
7 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
8 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
9 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
10 Sobic.008G129400 cytochrome c oxidase polypeptide Vc, putative, expressed -
11 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
12 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
13 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
14 Sobic.003G037800 transferase family protein, putative, expressed -
15 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
16 Sobic.010G070500 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
17 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
18 Sobic.002G296200 expressed protein -
19 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
20 Sobic.005G110800 - -


Gene co-expression network
sample Sobic001G432000 Sobic001G432000 Sobic010G251600 Sobic010G251600 Sobic001G432000--Sobic010G251600 Sobic005G168100 Sobic005G168100 Sobic001G432000--Sobic005G168100 Sobic001G304400 Sobic001G304400 Sobic001G432000--Sobic001G304400 Sobic009G232900 Sobic009G232900 Sobic001G432000--Sobic009G232900 Sobic007G019400 Sobic007G019400 Sobic001G432000--Sobic007G019400 Sobic003G150000 Sobic003G150000 Sobic001G432000--Sobic003G150000 Sobic001G054900 Sobic001G054900 Sobic001G432000--Sobic001G054900 Sobic010G206200 Sobic010G206200 Sobic001G432000--Sobic010G206200 Sobic006G156000 Sobic006G156000 Sobic001G432000--Sobic006G156000 Sobic010G251600--Sobic010G206200 Sobic010G251600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic010G251600--Sobic003G436700 Sobic007G178600 Sobic007G178600 Sobic010G251600--Sobic007G178600 Sobic009G215200 Sobic009G215200 Sobic010G251600--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic010G251600--Sobic006G116700 Sobic003G078200 Sobic003G078200 Sobic010G251600--Sobic003G078200 Sobic010G251600--Sobic001G054900 Sobic004G331400 Sobic004G331400 Sobic010G251600--Sobic004G331400 Sobic005G168100--Sobic009G232900 Sobic005G168100--Sobic001G432000 Sobic005G168100--Sobic006G156000 Sobic003G155400 Sobic003G155400 Sobic005G168100--Sobic003G155400 Sobic003G209000 Sobic003G209000 Sobic005G168100--Sobic003G209000 Sobic002G296200 Sobic002G296200 Sobic005G168100--Sobic002G296200 Sobic002G418400 Sobic002G418400 Sobic005G168100--Sobic002G418400 Sobic003G215700 Sobic003G215700 Sobic005G168100--Sobic003G215700 Sobic005G168100--Sobic003G150000 Sobic003G443300 Sobic003G443300 Sobic001G304400--Sobic003G443300 Sobic001G304400--Sobic001G432000 Sobic001G286200 Sobic001G286200 Sobic001G304400--Sobic001G286200 Sobic003G249700 Sobic003G249700 Sobic001G304400--Sobic003G249700 Sobic009G212200 Sobic009G212200 Sobic001G304400--Sobic009G212200 Sobic001G304400--Sobic007G019400 Sobic002G304900 Sobic002G304900 Sobic001G304400--Sobic002G304900 Sobic001G304400--Sobic003G150000 Sobic009G062000 Sobic009G062000 Sobic001G304400--Sobic009G062000 Sobic009G232900--Sobic005G168100 Sobic009G232900--Sobic001G432000 Sobic009G232900--Sobic003G150000 Sobic010G204500 Sobic010G204500 Sobic009G232900--Sobic010G204500 Sobic009G232900--Sobic002G296200 Sobic007G134900 Sobic007G134900 Sobic009G232900--Sobic007G134900 Sobic003G063200 Sobic003G063200 Sobic009G232900--Sobic003G063200 Sobic009G232900--Sobic010G251600 Sobic001G128400 Sobic001G128400 Sobic009G232900--Sobic001G128400 Sobic007G019400--Sobic003G249700 Sobic009G076400 Sobic009G076400 Sobic007G019400--Sobic009G076400 Sobic002G047600 Sobic002G047600 Sobic007G019400--Sobic002G047600 Sobic007G019400--Sobic010G251600 Sobic007G019400--Sobic010G206200 Sobic006G213000 Sobic006G213000 Sobic007G019400--Sobic006G213000 Sobic003G387900 Sobic003G387900 Sobic007G019400--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic007G019400--Sobic002G056200 Sobic001G226500 Sobic001G226500 Sobic007G019400--Sobic001G226500 Sobic005G110800 Sobic005G110800 Sobic003G150000--Sobic005G110800 Sobic003G150000--Sobic010G204500 Sobic003G150000--Sobic003G249700 Sobic001G493001 Sobic001G493001 Sobic003G150000--Sobic001G493001 Sobic001G403500 Sobic001G403500 Sobic003G150000--Sobic001G403500 Sobic003G150000--Sobic001G054900 Sobic009G050300 Sobic009G050300 Sobic003G150000--Sobic009G050300 Sobic005G019700 Sobic005G019700 Sobic003G150000--Sobic005G019700 Sobic009G163800 Sobic009G163800 Sobic003G150000--Sobic009G163800 Sobic003G408100 Sobic003G408100 Sobic001G054900--Sobic003G408100 Sobic001G054900--Sobic010G206200 Sobic001G054900--Sobic009G050300 Sobic001G054900--Sobic006G116700 Sobic007G019000 Sobic007G019000 Sobic001G054900--Sobic007G019000 Sobic001G054900--Sobic009G163800 Sobic001G036900 Sobic001G036900 Sobic001G054900--Sobic001G036900 Sobic001G018900 Sobic001G018900 Sobic001G054900--Sobic001G018900 Sobic001G091801 Sobic001G091801 Sobic001G054900--Sobic001G091801 Sobic010G206200--Sobic009G050300 Sobic009G054800 Sobic009G054800 Sobic010G206200--Sobic009G054800 Sobic010G206200--Sobic001G054900 Sobic010G206200--Sobic010G251600 Sobic010G206200--Sobic009G215200 Sobic010G206200--Sobic001G403500 Sobic010G206200--Sobic003G408100 Sobic010G206200--Sobic003G078200 Sobic010G206200--Sobic007G019400 Sobic006G156000--Sobic003G443300 Sobic006G156000--Sobic001G432000 Sobic006G156000--Sobic005G168100 Sobic003G219800 Sobic003G219800 Sobic006G156000--Sobic003G219800 Sobic001G084100 Sobic001G084100 Sobic006G156000--Sobic001G084100 Sobic006G156000--Sobic001G304400 Sobic006G156000--Sobic009G212200 Sobic002G361700 Sobic002G361700 Sobic006G156000--Sobic002G361700 Sobic001G040100 Sobic001G040100 Sobic006G156000--Sobic001G040100
Octagon: transcription factors


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