Gene annotation
Transcriptome id Sobic.009G232900.1
Synonym AtRABA1f, RABA1f, Sb09g028560
Functional annotation ras-related protein, putative, expressed
UniProt C5YVK5
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF346
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G60860 : RAB GTPase homolog A1F
RAP-DB (Rice) LOC_Os05g48980.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a036613 , Zm00025a044235 , Zm00025a037063 , Zm00025a001034 , Zm00025a038289 , Zm00025a008844 , Zm00025a042339 , Zm00025a005207 , Zm00025a008978 , Zm00025a018479 , Zm00025a046500 , Zm00025a016417 , Zm00025a028122 , Zm00025a044575 , Zm00025a013755 , Zm00025a039651 , Zm00025a043281 , Zm00025a051086 , Zm00025a053218
Brachypodium KQK10571 , KQK10572 , KQK12397 , KQK09101 , KQK04867 , KQK17534 , KQJ98137 , KQK08122 , KQK18040 , KQK12398 , KQK12193 , PNT73882 , KQK06841 , KQJ98073 , PNT64397
Barley HORVU7Hr1G052840.4 , HORVU7Hr1G052840.2 , HORVU7Hr1G052840.3 , HORVU7Hr1G052840.1 , HORVU7Hr1G089120.1 , HORVU7Hr1G089120.2 , HORVU5Hr1G120210.2 , HORVU5Hr1G120210.1 , HORVU5Hr1G120210.4 , HORVU7Hr1G063910.2 , HORVU1Hr1G001920.3 , HORVU1Hr1G001920.2 , HORVU5Hr1G056470.1 , HORVU3Hr1G061000.1 , HORVU3Hr1G061000.2 , HORVU3Hr1G061000.3 , HORVU3Hr1G061000.4 , HORVU3Hr1G061000.5 , HORVU3Hr1G061000.6 , HORVU3Hr1G061000.7 , HORVU3Hr1G061000.8 , HORVU5Hr1G114250.1 , HORVU5Hr1G114250.2 , HORVU3Hr1G085710.4 , HORVU3Hr1G085710.2 , HORVU3Hr1G085710.3 , HORVU3Hr1G085710.1
Wheat TraesCS7B02G273300 , TraesCS5D02G498600 , TraesCS1B02G152100 , TraesCS1D02G136900 , TraesCS1A02G015400 , TraesCS3B02G272300 , TraesCS3B02G396200 , TraesCS5A02G184100 , TraesCS1D02G405900 , TraesCS5D02G188900 , TraesCS7D02G368300 , TraesCS3D02G357500 , TraesCS5B02G182200 , TraesCS4A02G343500 , TraesCS5D02G321800 , TraesCS7B02G200600 , TraesCS7D02G254400 , TraesCS5D02G529500 , TraesCS7A02G256000 , TraesCS7A02G285200 , TraesCS1A02G398400 , TraesCS1B02G426300 , TraesCS1B02G018900 , TraesCS1D02G013300 , TraesCS5B02G316300 , TraesCS7B02G152600 , TraesCS5A02G485100 , TraesCS7A02G354400 , TraesCS7D02G289000 , TraesCS3A02G364100 , TraesCS3A02G247000 , TraesCS5B02G530800 , TraesCS5B02G498600 , TraesCS1A02G131500 , TraesCS1A02G131500 , TraesCS3D02G244500
Populus -


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cDNA sequences
Sobic.009G232900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G168100 ADP-ribosylation factor, putative, expressed K07950: ADP-ribosylation factor-like protein 5B
2 Sobic.001G432000 LYR motif containing protein, putative, expressed -
3 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
4 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
5 Sobic.002G296200 expressed protein -
6 Sobic.007G134900 expressed protein -
7 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
8 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
9 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
10 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
11 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
12 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
13 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
14 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
15 Sobic.010G012500 ATOZI1, putative, expressed -
16 Sobic.006G083500 SLL1 protein, putative, expressed -
17 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
18 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
19 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
20 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae


Gene co-expression network
sample Sobic009G232900 Sobic009G232900 Sobic005G168100 Sobic005G168100 Sobic009G232900--Sobic005G168100 Sobic001G432000 Sobic001G432000 Sobic009G232900--Sobic001G432000 Sobic003G150000 Sobic003G150000 Sobic009G232900--Sobic003G150000 Sobic010G204500 Sobic010G204500 Sobic009G232900--Sobic010G204500 Sobic002G296200 Sobic002G296200 Sobic009G232900--Sobic002G296200 Sobic007G134900 Sobic007G134900 Sobic009G232900--Sobic007G134900 Sobic003G063200 Sobic003G063200 Sobic009G232900--Sobic003G063200 Sobic010G251600 Sobic010G251600 Sobic009G232900--Sobic010G251600 Sobic001G128400 Sobic001G128400 Sobic009G232900--Sobic001G128400 Sobic005G168100--Sobic009G232900 Sobic005G168100--Sobic001G432000 Sobic006G156000 Sobic006G156000 Sobic005G168100--Sobic006G156000 Sobic003G155400 Sobic003G155400 Sobic005G168100--Sobic003G155400 Sobic003G209000 Sobic003G209000 Sobic005G168100--Sobic003G209000 Sobic005G168100--Sobic002G296200 Sobic002G418400 Sobic002G418400 Sobic005G168100--Sobic002G418400 Sobic003G215700 Sobic003G215700 Sobic005G168100--Sobic003G215700 Sobic005G168100--Sobic003G150000 Sobic001G432000--Sobic010G251600 Sobic001G432000--Sobic005G168100 Sobic001G304400 Sobic001G304400 Sobic001G432000--Sobic001G304400 Sobic001G432000--Sobic009G232900 Sobic007G019400 Sobic007G019400 Sobic001G432000--Sobic007G019400 Sobic001G432000--Sobic003G150000 Sobic001G054900 Sobic001G054900 Sobic001G432000--Sobic001G054900 Sobic010G206200 Sobic010G206200 Sobic001G432000--Sobic010G206200 Sobic001G432000--Sobic006G156000 Sobic005G110800 Sobic005G110800 Sobic003G150000--Sobic005G110800 Sobic003G150000--Sobic010G204500 Sobic003G249700 Sobic003G249700 Sobic003G150000--Sobic003G249700 Sobic001G493001 Sobic001G493001 Sobic003G150000--Sobic001G493001 Sobic001G403500 Sobic001G403500 Sobic003G150000--Sobic001G403500 Sobic003G150000--Sobic001G054900 Sobic009G050300 Sobic009G050300 Sobic003G150000--Sobic009G050300 Sobic005G019700 Sobic005G019700 Sobic003G150000--Sobic005G019700 Sobic009G163800 Sobic009G163800 Sobic003G150000--Sobic009G163800 Sobic010G204500--Sobic001G403500 Sobic001G483100 Sobic001G483100 Sobic010G204500--Sobic001G483100 Sobic001G016400 Sobic001G016400 Sobic010G204500--Sobic001G016400 Sobic010G204500--Sobic009G050300 Sobic009G180000 Sobic009G180000 Sobic010G204500--Sobic009G180000 Sobic002G056200 Sobic002G056200 Sobic010G204500--Sobic002G056200 Sobic002G081600 Sobic002G081600 Sobic010G204500--Sobic002G081600 Sobic009G215200 Sobic009G215200 Sobic010G204500--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic010G204500--Sobic001G018900 Sobic006G013000 Sobic006G013000 Sobic002G296200--Sobic006G013000 Sobic002G296200--Sobic007G134900 Sobic001G074700 Sobic001G074700 Sobic002G296200--Sobic001G074700 Sobic002G296200--Sobic003G215700 Sobic002G309700 Sobic002G309700 Sobic002G296200--Sobic002G309700 Sobic001G134400 Sobic001G134400 Sobic002G296200--Sobic001G134400 Sobic001G047800 Sobic001G047800 Sobic002G296200--Sobic001G047800 Sobic001G286200 Sobic001G286200 Sobic002G296200--Sobic001G286200 Sobic003G129800 Sobic003G129800 Sobic002G296200--Sobic003G129800 Sobic007G134900--Sobic002G296200 Sobic002G263100 Sobic002G263100 Sobic007G134900--Sobic002G263100 Sobic001G519000 Sobic001G519000 Sobic007G134900--Sobic001G519000 Sobic007G134900--Sobic001G047800 Sobic007G134900--Sobic003G215700 Sobic009G223300 Sobic009G223300 Sobic007G134900--Sobic009G223300 Sobic007G134900--Sobic001G286200 Sobic007G134900--Sobic002G309700 Sobic009G173500 Sobic009G173500 Sobic007G134900--Sobic009G173500 Sobic005G028700 Sobic005G028700 Sobic003G063200--Sobic005G028700 Sobic010G204600 Sobic010G204600 Sobic003G063200--Sobic010G204600 Sobic004G247200 Sobic004G247200 Sobic003G063200--Sobic004G247200 Sobic001G055600 Sobic001G055600 Sobic003G063200--Sobic001G055600 Sobic001G037000 Sobic001G037000 Sobic003G063200--Sobic001G037000 Sobic009G023200 Sobic009G023200 Sobic003G063200--Sobic009G023200 Sobic001G390300 Sobic001G390300 Sobic003G063200--Sobic001G390300 Sobic004G306300 Sobic004G306300 Sobic003G063200--Sobic004G306300 Sobic002G407900 Sobic002G407900 Sobic003G063200--Sobic002G407900 Sobic010G251600--Sobic010G206200 Sobic010G251600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic010G251600--Sobic003G436700 Sobic007G178600 Sobic007G178600 Sobic010G251600--Sobic007G178600 Sobic010G251600--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic010G251600--Sobic006G116700 Sobic003G078200 Sobic003G078200 Sobic010G251600--Sobic003G078200 Sobic010G251600--Sobic001G054900 Sobic004G331400 Sobic004G331400 Sobic010G251600--Sobic004G331400 Sobic005G111100 Sobic005G111100 Sobic001G128400--Sobic005G111100 Sobic001G128400--Sobic003G129800 Sobic001G128400--Sobic010G204500 Sobic006G081100 Sobic006G081100 Sobic001G128400--Sobic006G081100 Sobic001G128400--Sobic003G249700 Sobic002G049300 Sobic002G049300 Sobic001G128400--Sobic002G049300 Sobic010G054200 Sobic010G054200 Sobic001G128400--Sobic010G054200 Sobic003G280700 Sobic003G280700 Sobic001G128400--Sobic003G280700 Sobic003G109600 Sobic003G109600 Sobic001G128400--Sobic003G109600
Octagon: transcription factors


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