Gene annotation
Transcriptome id Sobic.003G215700.1
Synonym Sb03g027470
Functional annotation ATP synthase epsilon chain, mitochondrial, putative, expressed
UniProt C5XQE3
Pfam PF04627
Panther DB PTHR12448 PTHR12448:SF0
NCBI CDD KOG3495; Mitochondrial F1F0-ATP synthase, subunit epsilon/ATP15
KEGG Orthology K02135; ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
Gene Ontology GO:0015986; ATP synthesis coupled proton transport GO:0000275mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)


Orthologs (automatic annotation)
TAIR AT1G51650 : ATP synthase epsilon chain, mitochondrial
RAP-DB (Rice) LOC_Os08g15170.1 : ATP synthase epsilon chain, mitochondrial, putative, expressed
MaizeGDB (Corn) Zm00025a028683
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G215700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G083500 SLL1 protein, putative, expressed -
2 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
3 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
4 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
5 Sobic.004G211833 - K02267: cytochrome c oxidase subunit 6b
6 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
7 Sobic.004G060500 fiber protein Fb15, putative, expressed -
8 Sobic.001G134400 CHCH domain containing protein, expressed -
9 Sobic.010G012500 ATOZI1, putative, expressed -
10 Sobic.001G519000 expressed protein K03963: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 7
11 Sobic.009G176000 expressed protein K03945: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 1
12 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
13 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
14 Sobic.002G296200 expressed protein -
15 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
16 Sobic.007G134900 expressed protein -
17 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
18 Sobic.004G259200 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
19 Sobic.002G135200 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
20 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6


Gene co-expression network
sample Sobic003G215700 Sobic003G215700 Sobic006G083500 Sobic006G083500 Sobic003G215700--Sobic006G083500 Sobic002G418400 Sobic002G418400 Sobic003G215700--Sobic002G418400 Sobic001G047800 Sobic001G047800 Sobic003G215700--Sobic001G047800 Sobic003G209000 Sobic003G209000 Sobic003G215700--Sobic003G209000 Sobic004G211833 Sobic004G211833 Sobic003G215700--Sobic004G211833 Sobic001G404800 Sobic001G404800 Sobic003G215700--Sobic001G404800 Sobic004G060500 Sobic004G060500 Sobic003G215700--Sobic004G060500 Sobic001G134400 Sobic001G134400 Sobic003G215700--Sobic001G134400 Sobic010G012500 Sobic010G012500 Sobic003G215700--Sobic010G012500 Sobic006G083500--Sobic004G211833 Sobic006G083500--Sobic010G012500 Sobic006G083500--Sobic003G215700 Sobic006G083500--Sobic002G418400 Sobic009G176000 Sobic009G176000 Sobic006G083500--Sobic009G176000 Sobic002G398901 Sobic002G398901 Sobic006G083500--Sobic002G398901 Sobic006G083500--Sobic003G209000 Sobic007G051000 Sobic007G051000 Sobic006G083500--Sobic007G051000 Sobic006G083500--Sobic001G134400 Sobic002G418400--Sobic006G083500 Sobic002G418400--Sobic003G215700 Sobic002G418400--Sobic003G209000 Sobic002G418400--Sobic002G398901 Sobic002G418400--Sobic004G211833 Sobic002G418400--Sobic010G012500 Sobic002G418400--Sobic001G047800 Sobic004G259200 Sobic004G259200 Sobic002G418400--Sobic004G259200 Sobic002G418400--Sobic001G404800 Sobic002G309700 Sobic002G309700 Sobic001G047800--Sobic002G309700 Sobic001G047800--Sobic003G215700 Sobic001G047800--Sobic002G418400 Sobic004G260200 Sobic004G260200 Sobic001G047800--Sobic004G260200 Sobic001G047800--Sobic001G404800 Sobic002G263100 Sobic002G263100 Sobic001G047800--Sobic002G263100 Sobic001G047800--Sobic004G060500 Sobic007G134900 Sobic007G134900 Sobic001G047800--Sobic007G134900 Sobic001G519000 Sobic001G519000 Sobic001G047800--Sobic001G519000 Sobic003G209000--Sobic004G259200 Sobic003G209000--Sobic001G404800 Sobic003G209000--Sobic002G418400 Sobic001G018500 Sobic001G018500 Sobic003G209000--Sobic001G018500 Sobic003G209000--Sobic006G083500 Sobic003G209000--Sobic003G215700 Sobic003G209000--Sobic007G051000 Sobic009G119900 Sobic009G119900 Sobic003G209000--Sobic009G119900 Sobic003G209000--Sobic002G398901 Sobic004G211833--Sobic010G012500 Sobic004G211833--Sobic006G083500 Sobic004G211833--Sobic002G398901 Sobic004G220000 Sobic004G220000 Sobic004G211833--Sobic004G220000 Sobic004G211833--Sobic007G051000 Sobic004G211833--Sobic009G176000 Sobic004G211833--Sobic002G418400 Sobic002G190900 Sobic002G190900 Sobic004G211833--Sobic002G190900 Sobic004G211833--Sobic003G215700 Sobic001G404800--Sobic003G209000 Sobic001G404800--Sobic004G259200 Sobic001G404800--Sobic001G047800 Sobic001G404800--Sobic003G215700 Sobic001G404800--Sobic002G418400 Sobic002G356400 Sobic002G356400 Sobic001G404800--Sobic002G356400 Sobic001G404800--Sobic002G309700 Sobic001G404800--Sobic006G083500 Sobic001G404800--Sobic004G260200 Sobic004G060500--Sobic003G215700 Sobic004G060500--Sobic009G176000 Sobic004G060500--Sobic001G519000 Sobic004G060500--Sobic001G047800 Sobic004G060500--Sobic006G083500 Sobic004G060500--Sobic002G418400 Sobic004G060500--Sobic002G309700 Sobic002G296200 Sobic002G296200 Sobic004G060500--Sobic002G296200 Sobic010G059300 Sobic010G059300 Sobic004G060500--Sobic010G059300 Sobic001G134400--Sobic006G083500 Sobic001G134400--Sobic003G215700 Sobic001G134400--Sobic009G176000 Sobic007G053300 Sobic007G053300 Sobic001G134400--Sobic007G053300 Sobic001G134400--Sobic002G296200 Sobic001G134400--Sobic004G211833 Sobic001G074700 Sobic001G074700 Sobic001G134400--Sobic001G074700 Sobic007G134000 Sobic007G134000 Sobic001G134400--Sobic007G134000 Sobic001G134400--Sobic010G012500 Sobic010G012500--Sobic004G211833 Sobic010G012500--Sobic002G398901 Sobic010G012500--Sobic006G083500 Sobic010G012500--Sobic007G051000 Sobic010G012500--Sobic002G190900 Sobic010G012500--Sobic004G220000 Sobic010G012500--Sobic009G176000 Sobic002G375100 Sobic002G375100 Sobic010G012500--Sobic002G375100 Sobic010G012500--Sobic002G418400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.