Gene annotation
Transcriptome id Sobic.001G134400.1
Synonym Sb01g011740
Functional annotation CHCH domain containing protein, expressed
UniProt C5WPK5
Pfam PF06747
Panther DB PTHR13523
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G09570 : Cox19-like CHCH family protein
RAP-DB (Rice) LOC_Os03g48080.1 : CHCH domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007634
Brachypodium KQK13749
Barley HORVU4Hr1G004240.1 , HORVU4Hr1G004240.2 , HORVU4Hr1G004240.3 , HORVU4Hr1G004240.4
Wheat TraesCS4B02G028800 , TraesCS4D02G026400
Populus -


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cDNA sequences
Sobic.001G134400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G083500 SLL1 protein, putative, expressed -
2 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
3 Sobic.009G176000 expressed protein K03945: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 1
4 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
5 Sobic.002G296200 expressed protein -
6 Sobic.004G211833 - K02267: cytochrome c oxidase subunit 6b
7 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
8 Sobic.007G134000 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
9 Sobic.010G012500 ATOZI1, putative, expressed -
10 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
11 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
12 Sobic.004G060500 fiber protein Fb15, putative, expressed -
13 Sobic.009G119900 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
14 Sobic.007G134900 expressed protein -
15 Sobic.002G398901 - -
16 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
17 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
18 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
19 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
20 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1


Gene co-expression network
sample Sobic001G134400 Sobic001G134400 Sobic006G083500 Sobic006G083500 Sobic001G134400--Sobic006G083500 Sobic003G215700 Sobic003G215700 Sobic001G134400--Sobic003G215700 Sobic009G176000 Sobic009G176000 Sobic001G134400--Sobic009G176000 Sobic007G053300 Sobic007G053300 Sobic001G134400--Sobic007G053300 Sobic002G296200 Sobic002G296200 Sobic001G134400--Sobic002G296200 Sobic004G211833 Sobic004G211833 Sobic001G134400--Sobic004G211833 Sobic001G074700 Sobic001G074700 Sobic001G134400--Sobic001G074700 Sobic007G134000 Sobic007G134000 Sobic001G134400--Sobic007G134000 Sobic010G012500 Sobic010G012500 Sobic001G134400--Sobic010G012500 Sobic006G083500--Sobic004G211833 Sobic006G083500--Sobic010G012500 Sobic006G083500--Sobic003G215700 Sobic002G418400 Sobic002G418400 Sobic006G083500--Sobic002G418400 Sobic006G083500--Sobic009G176000 Sobic002G398901 Sobic002G398901 Sobic006G083500--Sobic002G398901 Sobic003G209000 Sobic003G209000 Sobic006G083500--Sobic003G209000 Sobic007G051000 Sobic007G051000 Sobic006G083500--Sobic007G051000 Sobic006G083500--Sobic001G134400 Sobic003G215700--Sobic006G083500 Sobic003G215700--Sobic002G418400 Sobic001G047800 Sobic001G047800 Sobic003G215700--Sobic001G047800 Sobic003G215700--Sobic003G209000 Sobic003G215700--Sobic004G211833 Sobic001G404800 Sobic001G404800 Sobic003G215700--Sobic001G404800 Sobic004G060500 Sobic004G060500 Sobic003G215700--Sobic004G060500 Sobic003G215700--Sobic001G134400 Sobic003G215700--Sobic010G012500 Sobic009G176000--Sobic002G398901 Sobic009G176000--Sobic007G051000 Sobic009G176000--Sobic006G083500 Sobic009G176000--Sobic010G012500 Sobic009G176000--Sobic004G211833 Sobic002G190900 Sobic002G190900 Sobic009G176000--Sobic002G190900 Sobic009G176000--Sobic004G060500 Sobic009G176000--Sobic002G418400 Sobic009G176000--Sobic003G215700 Sobic006G213000 Sobic006G213000 Sobic007G053300--Sobic006G213000 Sobic009G076400 Sobic009G076400 Sobic007G053300--Sobic009G076400 Sobic006G137100 Sobic006G137100 Sobic007G053300--Sobic006G137100 Sobic007G019400 Sobic007G019400 Sobic007G053300--Sobic007G019400 Sobic003G249700 Sobic003G249700 Sobic007G053300--Sobic003G249700 Sobic001G226500 Sobic001G226500 Sobic007G053300--Sobic001G226500 Sobic001G403500 Sobic001G403500 Sobic007G053300--Sobic001G403500 Sobic004G198400 Sobic004G198400 Sobic007G053300--Sobic004G198400 Sobic002G379500 Sobic002G379500 Sobic007G053300--Sobic002G379500 Sobic006G013000 Sobic006G013000 Sobic002G296200--Sobic006G013000 Sobic007G134900 Sobic007G134900 Sobic002G296200--Sobic007G134900 Sobic002G296200--Sobic001G074700 Sobic002G296200--Sobic003G215700 Sobic002G309700 Sobic002G309700 Sobic002G296200--Sobic002G309700 Sobic002G296200--Sobic001G134400 Sobic002G296200--Sobic001G047800 Sobic001G286200 Sobic001G286200 Sobic002G296200--Sobic001G286200 Sobic003G129800 Sobic003G129800 Sobic002G296200--Sobic003G129800 Sobic004G211833--Sobic010G012500 Sobic004G211833--Sobic006G083500 Sobic004G211833--Sobic002G398901 Sobic004G220000 Sobic004G220000 Sobic004G211833--Sobic004G220000 Sobic004G211833--Sobic007G051000 Sobic004G211833--Sobic009G176000 Sobic004G211833--Sobic002G418400 Sobic004G211833--Sobic002G190900 Sobic004G211833--Sobic003G215700 Sobic004G170400 Sobic004G170400 Sobic001G074700--Sobic004G170400 Sobic001G350600 Sobic001G350600 Sobic001G074700--Sobic001G350600 Sobic004G259200 Sobic004G259200 Sobic001G074700--Sobic004G259200 Sobic001G074700--Sobic002G309700 Sobic010G154700 Sobic010G154700 Sobic001G074700--Sobic010G154700 Sobic001G074700--Sobic002G296200 Sobic009G119900 Sobic009G119900 Sobic001G074700--Sobic009G119900 Sobic001G074700--Sobic001G047800 Sobic001G074700--Sobic002G418400 Sobic007G134000--Sobic001G134400 Sobic003G155400 Sobic003G155400 Sobic007G134000--Sobic003G155400 Sobic007G134000--Sobic002G296200 Sobic007G134000--Sobic007G051000 Sobic001G018500 Sobic001G018500 Sobic007G134000--Sobic001G018500 Sobic007G134000--Sobic006G083500 Sobic007G134000--Sobic003G129800 Sobic007G134000--Sobic003G215700 Sobic007G134000--Sobic004G211833 Sobic010G012500--Sobic004G211833 Sobic010G012500--Sobic002G398901 Sobic010G012500--Sobic006G083500 Sobic010G012500--Sobic007G051000 Sobic010G012500--Sobic002G190900 Sobic010G012500--Sobic004G220000 Sobic010G012500--Sobic009G176000 Sobic002G375100 Sobic002G375100 Sobic010G012500--Sobic002G375100 Sobic010G012500--Sobic002G418400
Octagon: transcription factors


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