Gene annotation
Transcriptome id Sobic.001G074700.1
Synonym Sb01g006750
Functional annotation cytochrome c oxidase-related, putative, expressed
UniProt C5WZ72
Pfam PF02046
Panther DB PTHR11504
NCBI CDD KOG3469; Cytochrome c oxidase, subunit VIa/COX13
KEGG Orthology K02266; cytochrome c oxidase subunit 6a
Gene Ontology GO:0005751; mitochondrial respiratory chain complex IV GO:0005743mitochondrial inner membrane GO:0004129cytochrome-c oxidase activity


Orthologs (automatic annotation)
TAIR AT4G37830 : cytochrome c oxidase-related
RAP-DB (Rice) LOC_Os03g56190.1 : cytochrome c oxidase-related, putative, expressed
MaizeGDB (Corn) Zm00025a008359
Brachypodium KQK12984
Barley HORVU5Hr1G098690.5 , HORVU5Hr1G098690.4 , HORVU5Hr1G098690.3 , HORVU5Hr1G098690.2 , HORVU5Hr1G098690.1
Wheat TraesCS4B02G150100 , TraesCS7A02G481400 , TraesCS7A02G481400 , TraesCS5B02G411700 , TraesCS5D02G416700 , TraesCS5A02G406700
Populus -


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cDNA sequences
Sobic.001G074700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
2 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
3 Sobic.004G259200 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
4 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
5 Sobic.010G154700 - -
6 Sobic.002G296200 expressed protein -
7 Sobic.009G119900 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
8 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
9 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
10 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
11 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
12 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
13 Sobic.001G134400 CHCH domain containing protein, expressed -
14 Sobic.001G465800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
15 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
16 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
17 Sobic.006G083500 SLL1 protein, putative, expressed -
18 Sobic.004G060500 fiber protein Fb15, putative, expressed -
19 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
20 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase


Gene co-expression network
sample Sobic001G074700 Sobic001G074700 Sobic004G170400 Sobic004G170400 Sobic001G074700--Sobic004G170400 Sobic001G350600 Sobic001G350600 Sobic001G074700--Sobic001G350600 Sobic004G259200 Sobic004G259200 Sobic001G074700--Sobic004G259200 Sobic002G309700 Sobic002G309700 Sobic001G074700--Sobic002G309700 Sobic010G154700 Sobic010G154700 Sobic001G074700--Sobic010G154700 Sobic002G296200 Sobic002G296200 Sobic001G074700--Sobic002G296200 Sobic009G119900 Sobic009G119900 Sobic001G074700--Sobic009G119900 Sobic001G047800 Sobic001G047800 Sobic001G074700--Sobic001G047800 Sobic002G418400 Sobic002G418400 Sobic001G074700--Sobic002G418400 Sobic004G170400--Sobic001G350600 Sobic004G170400--Sobic004G259200 Sobic004G170400--Sobic001G074700 Sobic001G465800 Sobic001G465800 Sobic004G170400--Sobic001G465800 Sobic004G170400--Sobic009G119900 Sobic002G356400 Sobic002G356400 Sobic004G170400--Sobic002G356400 Sobic003G209000 Sobic003G209000 Sobic004G170400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic004G170400--Sobic004G310300 Sobic004G170400--Sobic002G418400 Sobic001G350600--Sobic004G170400 Sobic001G350600--Sobic004G259200 Sobic001G350600--Sobic002G356400 Sobic001G350600--Sobic001G074700 Sobic001G350600--Sobic001G465800 Sobic001G350600--Sobic003G209000 Sobic001G404800 Sobic001G404800 Sobic001G350600--Sobic001G404800 Sobic001G350600--Sobic009G119900 Sobic004G030000 Sobic004G030000 Sobic001G350600--Sobic004G030000 Sobic004G259200--Sobic003G209000 Sobic004G259200--Sobic004G170400 Sobic004G259200--Sobic001G404800 Sobic004G259200--Sobic001G465800 Sobic004G259200--Sobic001G350600 Sobic004G259200--Sobic002G418400 Sobic004G259200--Sobic004G310300 Sobic004G259200--Sobic009G119900 Sobic004G259200--Sobic002G356400 Sobic004G260200 Sobic004G260200 Sobic002G309700--Sobic004G260200 Sobic002G309700--Sobic001G047800 Sobic002G309700--Sobic002G356400 Sobic009G215300 Sobic009G215300 Sobic002G309700--Sobic009G215300 Sobic002G309700--Sobic001G404800 Sobic002G309700--Sobic001G074700 Sobic002G309700--Sobic002G296200 Sobic002G309700--Sobic001G465800 Sobic003G215700 Sobic003G215700 Sobic002G309700--Sobic003G215700 Sobic001G048832 Sobic001G048832 Sobic010G154700--Sobic001G048832 Sobic001G132100 Sobic001G132100 Sobic010G154700--Sobic001G132100 Sobic007G051000 Sobic007G051000 Sobic010G154700--Sobic007G051000 Sobic010G154700--Sobic001G074700 Sobic003G155400 Sobic003G155400 Sobic010G154700--Sobic003G155400 Sobic010G154700--Sobic009G119900 Sobic002G190900 Sobic002G190900 Sobic010G154700--Sobic002G190900 Sobic002G398901 Sobic002G398901 Sobic010G154700--Sobic002G398901 Sobic009G176000 Sobic009G176000 Sobic010G154700--Sobic009G176000 Sobic006G013000 Sobic006G013000 Sobic002G296200--Sobic006G013000 Sobic007G134900 Sobic007G134900 Sobic002G296200--Sobic007G134900 Sobic002G296200--Sobic001G074700 Sobic002G296200--Sobic003G215700 Sobic002G296200--Sobic002G309700 Sobic001G134400 Sobic001G134400 Sobic002G296200--Sobic001G134400 Sobic002G296200--Sobic001G047800 Sobic001G286200 Sobic001G286200 Sobic002G296200--Sobic001G286200 Sobic003G129800 Sobic003G129800 Sobic002G296200--Sobic003G129800 Sobic009G119900--Sobic002G356400 Sobic009G119900--Sobic003G209000 Sobic009G119900--Sobic004G310300 Sobic009G119900--Sobic004G170400 Sobic009G119900--Sobic004G259200 Sobic009G119900--Sobic007G051000 Sobic001G172000 Sobic001G172000 Sobic009G119900--Sobic001G172000 Sobic006G083500 Sobic006G083500 Sobic009G119900--Sobic006G083500 Sobic009G119900--Sobic010G154700 Sobic001G047800--Sobic002G309700 Sobic001G047800--Sobic003G215700 Sobic001G047800--Sobic002G418400 Sobic001G047800--Sobic004G260200 Sobic001G047800--Sobic001G404800 Sobic002G263100 Sobic002G263100 Sobic001G047800--Sobic002G263100 Sobic004G060500 Sobic004G060500 Sobic001G047800--Sobic004G060500 Sobic001G047800--Sobic007G134900 Sobic001G519000 Sobic001G519000 Sobic001G047800--Sobic001G519000 Sobic002G418400--Sobic006G083500 Sobic002G418400--Sobic003G215700 Sobic002G418400--Sobic003G209000 Sobic002G418400--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic002G418400--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic002G418400--Sobic010G012500 Sobic002G418400--Sobic001G047800 Sobic002G418400--Sobic004G259200 Sobic002G418400--Sobic001G404800
Octagon: transcription factors


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