Gene annotation
Transcriptome id Sobic.004G260200.1
Synonym OEP16-3, Sb04g029860, ATOEP16-3
Functional annotation mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
UniProt C5XZV8
Pfam PF02466
Panther DB PTHR14110 PTHR14110:SF4
NCBI CDD KOG3225; Mitochondrial import inner membrane translocase, subunit TIM22
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G42210 : Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
RAP-DB (Rice) LOC_Os02g48610.1 : mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
MaizeGDB (Corn) Zm00025a021817
Brachypodium -
Barley HORVU6Hr1G070480.1
Wheat TraesCS6D02G260800 , TraesCS6A02G280600 , TraesCS6B02G308900
Populus -


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cDNA sequences
Sobic.004G260200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
2 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
3 Sobic.001G465800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
4 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
5 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
6 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
7 Sobic.009G215300 fiber protein Fb11, putative, expressed -
8 Sobic.002G263100 ferredoxin 1-like isoform 1, putative, expressed -
9 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
10 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
11 Sobic.003G218400 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
12 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
13 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
14 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
15 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
16 Sobic.002G296200 expressed protein -
17 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
18 Sobic.004G259200 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
19 Sobic.007G134900 expressed protein -
20 Sobic.004G060500 fiber protein Fb15, putative, expressed -


Gene co-expression network
sample Sobic004G260200 Sobic004G260200 Sobic002G309700 Sobic002G309700 Sobic004G260200--Sobic002G309700 Sobic001G047800 Sobic001G047800 Sobic004G260200--Sobic001G047800 Sobic001G465800 Sobic001G465800 Sobic004G260200--Sobic001G465800 Sobic002G395000 Sobic002G395000 Sobic004G260200--Sobic002G395000 Sobic002G356400 Sobic002G356400 Sobic004G260200--Sobic002G356400 Sobic001G404800 Sobic001G404800 Sobic004G260200--Sobic001G404800 Sobic009G215300 Sobic009G215300 Sobic004G260200--Sobic009G215300 Sobic002G263100 Sobic002G263100 Sobic004G260200--Sobic002G263100 Sobic001G074700 Sobic001G074700 Sobic004G260200--Sobic001G074700 Sobic002G309700--Sobic004G260200 Sobic002G309700--Sobic001G047800 Sobic002G309700--Sobic002G356400 Sobic002G309700--Sobic009G215300 Sobic002G309700--Sobic001G404800 Sobic002G309700--Sobic001G074700 Sobic002G296200 Sobic002G296200 Sobic002G309700--Sobic002G296200 Sobic002G309700--Sobic001G465800 Sobic003G215700 Sobic003G215700 Sobic002G309700--Sobic003G215700 Sobic001G047800--Sobic002G309700 Sobic001G047800--Sobic003G215700 Sobic002G418400 Sobic002G418400 Sobic001G047800--Sobic002G418400 Sobic001G047800--Sobic004G260200 Sobic001G047800--Sobic001G404800 Sobic001G047800--Sobic002G263100 Sobic004G060500 Sobic004G060500 Sobic001G047800--Sobic004G060500 Sobic007G134900 Sobic007G134900 Sobic001G047800--Sobic007G134900 Sobic001G519000 Sobic001G519000 Sobic001G047800--Sobic001G519000 Sobic001G465800--Sobic002G356400 Sobic004G259200 Sobic004G259200 Sobic001G465800--Sobic004G259200 Sobic001G465800--Sobic004G260200 Sobic004G170400 Sobic004G170400 Sobic001G465800--Sobic004G170400 Sobic001G350600 Sobic001G350600 Sobic001G465800--Sobic001G350600 Sobic001G465800--Sobic002G309700 Sobic001G465800--Sobic001G074700 Sobic001G465800--Sobic001G404800 Sobic001G465800--Sobic001G047800 Sobic002G395000--Sobic004G260200 Sobic003G135600 Sobic003G135600 Sobic002G395000--Sobic003G135600 Sobic009G224400 Sobic009G224400 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G395000--Sobic002G309700 Sobic001G073600 Sobic001G073600 Sobic002G395000--Sobic001G073600 Sobic004G155100 Sobic004G155100 Sobic002G395000--Sobic004G155100 Sobic007G023400 Sobic007G023400 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic002G356400--Sobic002G309700 Sobic002G356400--Sobic001G465800 Sobic009G119900 Sobic009G119900 Sobic002G356400--Sobic009G119900 Sobic002G356400--Sobic001G350600 Sobic002G356400--Sobic004G170400 Sobic002G356400--Sobic004G260200 Sobic002G356400--Sobic001G404800 Sobic002G356400--Sobic004G259200 Sobic003G209000 Sobic003G209000 Sobic002G356400--Sobic003G209000 Sobic001G404800--Sobic003G209000 Sobic001G404800--Sobic004G259200 Sobic001G404800--Sobic001G047800 Sobic001G404800--Sobic003G215700 Sobic001G404800--Sobic002G418400 Sobic001G404800--Sobic002G356400 Sobic001G404800--Sobic002G309700 Sobic006G083500 Sobic006G083500 Sobic001G404800--Sobic006G083500 Sobic001G404800--Sobic004G260200 Sobic009G215300--Sobic002G309700 Sobic001G181500 Sobic001G181500 Sobic009G215300--Sobic001G181500 Sobic009G215300--Sobic001G047800 Sobic009G215300--Sobic004G260200 Sobic009G211900 Sobic009G211900 Sobic009G215300--Sobic009G211900 Sobic007G013900 Sobic007G013900 Sobic009G215300--Sobic007G013900 Sobic001G282500 Sobic001G282500 Sobic009G215300--Sobic001G282500 Sobic009G215300--Sobic003G135600 Sobic009G215300--Sobic001G404800 Sobic002G263100--Sobic007G134900 Sobic002G263100--Sobic001G047800 Sobic002G263100--Sobic002G309700 Sobic002G263100--Sobic001G519000 Sobic002G263100--Sobic004G260200 Sobic003G296800 Sobic003G296800 Sobic002G263100--Sobic003G296800 Sobic002G263100--Sobic003G215700 Sobic001G286200 Sobic001G286200 Sobic002G263100--Sobic001G286200 Sobic002G263100--Sobic001G404800 Sobic001G074700--Sobic004G170400 Sobic001G074700--Sobic001G350600 Sobic001G074700--Sobic004G259200 Sobic001G074700--Sobic002G309700 Sobic010G154700 Sobic010G154700 Sobic001G074700--Sobic010G154700 Sobic001G074700--Sobic002G296200 Sobic001G074700--Sobic009G119900 Sobic001G074700--Sobic001G047800 Sobic001G074700--Sobic002G418400
Octagon: transcription factors


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