Gene annotation
| Transcriptome id | Sobic.001G465800.1 |
|---|---|
| Synonym | Sb01g043700, ATVDAC2, VDAC2 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) outer mitochondrial membrane porin, putative, expressed |
| UniProt | C5WTT2 |
| Pfam | PF01459 |
| Panther DB | PTHR11743 PTHR11743:SF29 |
| NCBI CDD | KOG3126; Porin/voltage-dependent anion-selective channel protein |
| KEGG Orthology | K15040; voltage-dependent anion channel protein 2 |
| Gene Ontology | GO:0005741; mitochondrial outer membrane |
Orthologs (automatic annotation)
| TAIR | AT5G67500 : voltage dependent anion channel 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g10510.1 : outer mitochondrial membrane porin, putative, expressed |
| MaizeGDB (Corn) | Zm00025a039668 , Zm00025a053142 , Zm00025a001158 |
| Brachypodium | KQK23059 |
| Barley | HORVU4Hr1G070150.7 , HORVU4Hr1G070150.6 , HORVU4Hr1G070150.5 , HORVU4Hr1G070150.4 , HORVU4Hr1G070150.3 , HORVU4Hr1G070150.2 , HORVU4Hr1G070150.1 |
| Wheat | TraesCS4D02G258900 , TraesCS4A02G046000 , TraesCS4B02G259600 |
| Populus | - |
JBrowse
| Sobic.001G465800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G356400 | NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed | K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4 |
| 2 | Sobic.004G259200 | mitochondrial carrier protein, putative, expressed | K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31 |
| 3 | Sobic.004G260200 | mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 4 | Sobic.004G170400 | ubiquinol-cytochrome C reductase hinge protein, putative, expressed | K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6 |
| 5 | Sobic.001G350600 | cytochrome c oxidase subunit, putative, expressed | K02267: cytochrome c oxidase subunit 6b |
| 6 | Sobic.002G309700 | ATP synthase delta chain, mitochondrial precursor, putative, expressed | K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta |
| 7 | Sobic.001G074700 | cytochrome c oxidase-related, putative, expressed | K02266: cytochrome c oxidase subunit 6a |
| 8 | Sobic.001G404800 | CHCH domain containing protein, expressed | K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8 |
| 9 | Sobic.001G047800 | cytochrome b-c1 complex subunit 7, putative, expressed | K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7 |
| 10 | Sobic.004G030000 | mitochondrial ATP synthase precursor, putative, expressed | - |
| 11 | Sobic.009G119900 | acyl carrier protein, putative, expressed | K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein |
| 12 | Sobic.003G209000 | mitochondrial ATP synthase g subunit family protein, putative, expressed | K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g |
| 13 | Sobic.004G310300 | phosphate carrier protein, mitochondrial precursor, putative, expressed | K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3 |
| 14 | Sobic.002G395000 | bacterial transferase hexapeptide domain containing protein, expressed | - |
| 15 | Sobic.003G215700 | ATP synthase epsilon chain, mitochondrial, putative, expressed | K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon |
| 16 | Sobic.004G211833 | - | K02267: cytochrome c oxidase subunit 6b |
| 17 | Sobic.002G418400 | ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed | - |
| 18 | Sobic.009G215300 | fiber protein Fb11, putative, expressed | - |
| 19 | Sobic.004G286100 | ribosomal protein L6, putative, expressed | K02933: RP-L6, MRPL6, large subunit ribosomal protein L6 |
| 20 | Sobic.006G083500 | SLL1 protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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