Gene annotation
Transcriptome id Sobic.004G286100.1
Synonym Sb04g032200
Functional annotation ribosomal protein L6, putative, expressed
UniProt C5Y1B5
Pfam PF00347
Panther DB PTHR11655 PTHR11655:SF17
NCBI CDD -
KEGG Orthology K02933; RP-L6, MRPL6, large subunit ribosomal protein L6
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G18400 : ribosomal protein L6 family protein
RAP-DB (Rice) LOC_Os03g51510.2 : ribosomal protein L6, putative, expressed
MaizeGDB (Corn) Zm00025a032270
Brachypodium KQJ86503 , KQJ86504
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G286100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G259200 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
2 Sobic.002G135200 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
3 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
4 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
5 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
6 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
7 Sobic.009G119900 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
8 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
9 Sobic.001G465800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
10 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
11 Sobic.001G018500 expressed protein K17784: MINOS1, mitochondrial inner membrane organizing system protein 1
12 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
13 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
14 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
15 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
16 Sobic.005G229300 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
17 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
18 Sobic.002G296200 expressed protein -
19 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
20 Sobic.010G012500 ATOZI1, putative, expressed -


Gene co-expression network
sample Sobic004G286100 Sobic004G286100 Sobic004G259200 Sobic004G259200 Sobic004G286100--Sobic004G259200 Sobic002G135200 Sobic002G135200 Sobic004G286100--Sobic002G135200 Sobic001G074700 Sobic001G074700 Sobic004G286100--Sobic001G074700 Sobic004G170400 Sobic004G170400 Sobic004G286100--Sobic004G170400 Sobic004G310300 Sobic004G310300 Sobic004G286100--Sobic004G310300 Sobic001G513500 Sobic001G513500 Sobic004G286100--Sobic001G513500 Sobic009G119900 Sobic009G119900 Sobic004G286100--Sobic009G119900 Sobic003G209000 Sobic003G209000 Sobic004G286100--Sobic003G209000 Sobic001G465800 Sobic001G465800 Sobic004G286100--Sobic001G465800 Sobic004G259200--Sobic003G209000 Sobic004G259200--Sobic004G170400 Sobic001G404800 Sobic001G404800 Sobic004G259200--Sobic001G404800 Sobic004G259200--Sobic001G465800 Sobic001G350600 Sobic001G350600 Sobic004G259200--Sobic001G350600 Sobic002G418400 Sobic002G418400 Sobic004G259200--Sobic002G418400 Sobic004G259200--Sobic004G310300 Sobic004G259200--Sobic009G119900 Sobic002G356400 Sobic002G356400 Sobic004G259200--Sobic002G356400 Sobic004G198400 Sobic004G198400 Sobic002G135200--Sobic004G198400 Sobic002G374900 Sobic002G374900 Sobic002G135200--Sobic002G374900 Sobic002G379500 Sobic002G379500 Sobic002G135200--Sobic002G379500 Sobic001G011200 Sobic001G011200 Sobic002G135200--Sobic001G011200 Sobic001G175300 Sobic001G175300 Sobic002G135200--Sobic001G175300 Sobic007G018300 Sobic007G018300 Sobic002G135200--Sobic007G018300 Sobic009G223300 Sobic009G223300 Sobic002G135200--Sobic009G223300 Sobic001G091801 Sobic001G091801 Sobic002G135200--Sobic001G091801 Sobic001G533500 Sobic001G533500 Sobic002G135200--Sobic001G533500 Sobic001G074700--Sobic004G170400 Sobic001G074700--Sobic001G350600 Sobic001G074700--Sobic004G259200 Sobic002G309700 Sobic002G309700 Sobic001G074700--Sobic002G309700 Sobic010G154700 Sobic010G154700 Sobic001G074700--Sobic010G154700 Sobic002G296200 Sobic002G296200 Sobic001G074700--Sobic002G296200 Sobic001G074700--Sobic009G119900 Sobic001G047800 Sobic001G047800 Sobic001G074700--Sobic001G047800 Sobic001G074700--Sobic002G418400 Sobic004G170400--Sobic001G350600 Sobic004G170400--Sobic004G259200 Sobic004G170400--Sobic001G074700 Sobic004G170400--Sobic001G465800 Sobic004G170400--Sobic009G119900 Sobic004G170400--Sobic002G356400 Sobic004G170400--Sobic003G209000 Sobic004G170400--Sobic004G310300 Sobic004G170400--Sobic002G418400 Sobic004G310300--Sobic009G119900 Sobic004G310300--Sobic004G259200 Sobic007G051000 Sobic007G051000 Sobic004G310300--Sobic007G051000 Sobic001G018500 Sobic001G018500 Sobic004G310300--Sobic001G018500 Sobic010G204500 Sobic010G204500 Sobic004G310300--Sobic010G204500 Sobic003G155400 Sobic003G155400 Sobic004G310300--Sobic003G155400 Sobic004G066800 Sobic004G066800 Sobic004G310300--Sobic004G066800 Sobic004G310300--Sobic001G513500 Sobic005G188100 Sobic005G188100 Sobic004G310300--Sobic005G188100 Sobic001G513500--Sobic001G011200 Sobic002G056200 Sobic002G056200 Sobic001G513500--Sobic002G056200 Sobic003G129800 Sobic003G129800 Sobic001G513500--Sobic003G129800 Sobic005G050500 Sobic005G050500 Sobic001G513500--Sobic005G050500 Sobic001G334300 Sobic001G334300 Sobic001G513500--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic001G513500--Sobic009G179100 Sobic001G513500--Sobic004G310300 Sobic005G091700 Sobic005G091700 Sobic001G513500--Sobic005G091700 Sobic010G100000 Sobic010G100000 Sobic001G513500--Sobic010G100000 Sobic009G119900--Sobic002G356400 Sobic009G119900--Sobic003G209000 Sobic009G119900--Sobic004G310300 Sobic009G119900--Sobic004G170400 Sobic009G119900--Sobic004G259200 Sobic009G119900--Sobic007G051000 Sobic001G172000 Sobic001G172000 Sobic009G119900--Sobic001G172000 Sobic006G083500 Sobic006G083500 Sobic009G119900--Sobic006G083500 Sobic009G119900--Sobic010G154700 Sobic003G209000--Sobic004G259200 Sobic003G209000--Sobic001G404800 Sobic003G209000--Sobic002G418400 Sobic003G209000--Sobic001G018500 Sobic003G209000--Sobic006G083500 Sobic003G215700 Sobic003G215700 Sobic003G209000--Sobic003G215700 Sobic003G209000--Sobic007G051000 Sobic003G209000--Sobic009G119900 Sobic002G398901 Sobic002G398901 Sobic003G209000--Sobic002G398901 Sobic001G465800--Sobic002G356400 Sobic001G465800--Sobic004G259200 Sobic004G260200 Sobic004G260200 Sobic001G465800--Sobic004G260200 Sobic001G465800--Sobic004G170400 Sobic001G465800--Sobic001G350600 Sobic001G465800--Sobic002G309700 Sobic001G465800--Sobic001G074700 Sobic001G465800--Sobic001G404800 Sobic001G465800--Sobic001G047800
Octagon: transcription factors


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