Gene annotation
Transcriptome id Sobic.005G229300.1
Synonym Sb05g027730, P40, AP40, RP40, RPSAA
Functional annotation ribosomal protein S2, putative, expressed
UniProt A0A1B6PU65
Pfam PF16122 PF00318
Panther DB PTHR11489
NCBI CDD KOG0830; 40S ribosomal protein SA (P40)/Laminin receptor 1
KEGG Orthology K02998; RP-SAe, small subunit ribosomal protein SAe
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome GO:0015935small ribosomal subunit


Orthologs (automatic annotation)
TAIR AT3G04770 : 40s ribosomal protein SA B
RAP-DB (Rice) LOC_Os07g42450.1 : ribosomal protein S2, putative, expressed
MaizeGDB (Corn) Zm00025a053370 , Zm00025a053261 , Zm00025a015219 , Zm00025a000466
Brachypodium KQK15577 , KQK15576 , KQK23288 , KQK15134
Barley HORVU7Hr1G091190.1 , HORVU6Hr1G022460.1 , HORVU4Hr1G077240.2 , HORVU4Hr1G077240.1
Wheat TraesCS2A02G168300 , TraesCS4B02G299100 , TraesCS4A02G006000 , TraesCS2D02G175700 , TraesCS4D02G298000 , TraesCS2B02G194400
Populus -


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cDNA sequences
Sobic.005G229300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
2 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
3 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
4 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
5 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
6 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
7 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
8 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
9 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
10 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
11 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
12 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
13 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
14 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
15 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
16 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
17 Sobic.006G138100 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
18 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
19 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
20 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e


Gene co-expression network
sample Sobic005G229300 Sobic005G229300 Sobic002G379500 Sobic002G379500 Sobic005G229300--Sobic002G379500 Sobic001G533500 Sobic001G533500 Sobic005G229300--Sobic001G533500 Sobic007G018300 Sobic007G018300 Sobic005G229300--Sobic007G018300 Sobic001G483100 Sobic001G483100 Sobic005G229300--Sobic001G483100 Sobic003G109600 Sobic003G109600 Sobic005G229300--Sobic003G109600 Sobic003G249700 Sobic003G249700 Sobic005G229300--Sobic003G249700 Sobic009G223300 Sobic009G223300 Sobic005G229300--Sobic009G223300 Sobic007G019000 Sobic007G019000 Sobic005G229300--Sobic007G019000 Sobic007G019400 Sobic007G019400 Sobic005G229300--Sobic007G019400 Sobic009G050300 Sobic009G050300 Sobic002G379500--Sobic009G050300 Sobic006G213000 Sobic006G213000 Sobic002G379500--Sobic006G213000 Sobic002G056200 Sobic002G056200 Sobic002G379500--Sobic002G056200 Sobic001G403500 Sobic001G403500 Sobic002G379500--Sobic001G403500 Sobic006G116700 Sobic006G116700 Sobic002G379500--Sobic006G116700 Sobic002G379500--Sobic003G109600 Sobic007G197800 Sobic007G197800 Sobic002G379500--Sobic007G197800 Sobic004G198400 Sobic004G198400 Sobic002G379500--Sobic004G198400 Sobic004G008400 Sobic004G008400 Sobic002G379500--Sobic004G008400 Sobic001G533500--Sobic007G019000 Sobic001G533500--Sobic007G018300 Sobic010G230700 Sobic010G230700 Sobic001G533500--Sobic010G230700 Sobic001G054900 Sobic001G054900 Sobic001G533500--Sobic001G054900 Sobic001G533500--Sobic009G050300 Sobic007G178600 Sobic007G178600 Sobic001G533500--Sobic007G178600 Sobic001G533500--Sobic006G116700 Sobic004G104100 Sobic004G104100 Sobic001G533500--Sobic004G104100 Sobic001G533500--Sobic004G008400 Sobic007G018300--Sobic010G230700 Sobic005G019700 Sobic005G019700 Sobic007G018300--Sobic005G019700 Sobic009G215200 Sobic009G215200 Sobic007G018300--Sobic009G215200 Sobic007G018300--Sobic009G050300 Sobic007G018300--Sobic006G116700 Sobic001G016400 Sobic001G016400 Sobic007G018300--Sobic001G016400 Sobic007G018300--Sobic007G019000 Sobic007G018300--Sobic007G197800 Sobic007G018300--Sobic001G054900 Sobic010G204500 Sobic010G204500 Sobic001G483100--Sobic010G204500 Sobic009G180000 Sobic009G180000 Sobic001G483100--Sobic009G180000 Sobic001G014500 Sobic001G014500 Sobic001G483100--Sobic001G014500 Sobic001G483100--Sobic002G056200 Sobic001G483100--Sobic003G249700 Sobic001G483100--Sobic005G229300 Sobic001G483100--Sobic002G379500 Sobic001G537200 Sobic001G537200 Sobic001G483100--Sobic001G537200 Sobic001G483100--Sobic003G109600 Sobic003G109600--Sobic002G379500 Sobic003G109600--Sobic009G223300 Sobic003G109600--Sobic001G403500 Sobic001G039400 Sobic001G039400 Sobic003G109600--Sobic001G039400 Sobic003G109600--Sobic003G249700 Sobic003G109600--Sobic002G056200 Sobic002G047600 Sobic002G047600 Sobic003G109600--Sobic002G047600 Sobic003G109600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic003G109600--Sobic003G436700 Sobic003G249700--Sobic007G019400 Sobic001G226500 Sobic001G226500 Sobic003G249700--Sobic001G226500 Sobic003G249700--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic003G249700--Sobic007G178600 Sobic003G249700--Sobic004G008400 Sobic001G085400 Sobic001G085400 Sobic003G249700--Sobic001G085400 Sobic003G249700--Sobic003G109600 Sobic009G223300--Sobic003G109600 Sobic002G372400 Sobic002G372400 Sobic009G223300--Sobic002G372400 Sobic009G223300--Sobic002G379500 Sobic009G223300--Sobic007G018300 Sobic009G223300--Sobic010G230700 Sobic010G076400 Sobic010G076400 Sobic009G223300--Sobic010G076400 Sobic009G223300--Sobic004G198400 Sobic009G233400 Sobic009G233400 Sobic009G223300--Sobic009G233400 Sobic009G223300--Sobic001G039400 Sobic007G019000--Sobic007G178600 Sobic007G019000--Sobic001G054900 Sobic007G019000--Sobic009G050300 Sobic004G322200 Sobic004G322200 Sobic007G019000--Sobic004G322200 Sobic007G019000--Sobic007G018300 Sobic004G103800 Sobic004G103800 Sobic007G019000--Sobic004G103800 Sobic007G019000--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic007G019000--Sobic002G115000 Sobic007G019000--Sobic001G533500 Sobic007G019400--Sobic003G249700 Sobic009G076400 Sobic009G076400 Sobic007G019400--Sobic009G076400 Sobic007G019400--Sobic002G047600 Sobic010G251600 Sobic010G251600 Sobic007G019400--Sobic010G251600 Sobic010G206200 Sobic010G206200 Sobic007G019400--Sobic010G206200 Sobic007G019400--Sobic006G213000 Sobic007G019400--Sobic003G387900 Sobic007G019400--Sobic002G056200 Sobic007G019400--Sobic001G226500
Octagon: transcription factors


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