Gene annotation
Transcriptome id Sobic.004G170400.1
Synonym Sb04g022156
Functional annotation ubiquinol-cytochrome C reductase hinge protein, putative, expressed
UniProt C5XU35
Pfam PF02320
Panther DB PTHR15336 PTHR15336:SF2
NCBI CDD KOG4763; Ubiquinol-cytochrome c reductase hinge protein
KEGG Orthology K00416; QCR6, ubiquinol-cytochrome c reductase subunit 6
Gene Ontology GO:0008121; ubiquinol-cytochrome-c reductase activity GO:0006122mitochondrial electron transport, ubiquinol to cytochrome c


Orthologs (automatic annotation)
TAIR AT1G15120 : Ubiquinol-cytochrome C reductase hinge protein
RAP-DB (Rice) LOC_Os02g33730.1 : ubiquinol-cytochrome C reductase hinge protein, putative, expressed
MaizeGDB (Corn) Zm00025a020590
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G170400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
2 Sobic.004G259200 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
3 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
4 Sobic.001G465800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
5 Sobic.009G119900 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
6 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
7 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
8 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
9 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
10 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
11 Sobic.010G154700 - -
12 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
13 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
14 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
15 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
16 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
17 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
18 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
19 Sobic.006G083500 SLL1 protein, putative, expressed -
20 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase


Gene co-expression network
sample Sobic004G170400 Sobic004G170400 Sobic001G350600 Sobic001G350600 Sobic004G170400--Sobic001G350600 Sobic004G259200 Sobic004G259200 Sobic004G170400--Sobic004G259200 Sobic001G074700 Sobic001G074700 Sobic004G170400--Sobic001G074700 Sobic001G465800 Sobic001G465800 Sobic004G170400--Sobic001G465800 Sobic009G119900 Sobic009G119900 Sobic004G170400--Sobic009G119900 Sobic002G356400 Sobic002G356400 Sobic004G170400--Sobic002G356400 Sobic003G209000 Sobic003G209000 Sobic004G170400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic004G170400--Sobic004G310300 Sobic002G418400 Sobic002G418400 Sobic004G170400--Sobic002G418400 Sobic001G350600--Sobic004G170400 Sobic001G350600--Sobic004G259200 Sobic001G350600--Sobic002G356400 Sobic001G350600--Sobic001G074700 Sobic001G350600--Sobic001G465800 Sobic001G350600--Sobic003G209000 Sobic001G404800 Sobic001G404800 Sobic001G350600--Sobic001G404800 Sobic001G350600--Sobic009G119900 Sobic004G030000 Sobic004G030000 Sobic001G350600--Sobic004G030000 Sobic004G259200--Sobic003G209000 Sobic004G259200--Sobic004G170400 Sobic004G259200--Sobic001G404800 Sobic004G259200--Sobic001G465800 Sobic004G259200--Sobic001G350600 Sobic004G259200--Sobic002G418400 Sobic004G259200--Sobic004G310300 Sobic004G259200--Sobic009G119900 Sobic004G259200--Sobic002G356400 Sobic001G074700--Sobic004G170400 Sobic001G074700--Sobic001G350600 Sobic001G074700--Sobic004G259200 Sobic002G309700 Sobic002G309700 Sobic001G074700--Sobic002G309700 Sobic010G154700 Sobic010G154700 Sobic001G074700--Sobic010G154700 Sobic002G296200 Sobic002G296200 Sobic001G074700--Sobic002G296200 Sobic001G074700--Sobic009G119900 Sobic001G047800 Sobic001G047800 Sobic001G074700--Sobic001G047800 Sobic001G074700--Sobic002G418400 Sobic001G465800--Sobic002G356400 Sobic001G465800--Sobic004G259200 Sobic004G260200 Sobic004G260200 Sobic001G465800--Sobic004G260200 Sobic001G465800--Sobic004G170400 Sobic001G465800--Sobic001G350600 Sobic001G465800--Sobic002G309700 Sobic001G465800--Sobic001G074700 Sobic001G465800--Sobic001G404800 Sobic001G465800--Sobic001G047800 Sobic009G119900--Sobic002G356400 Sobic009G119900--Sobic003G209000 Sobic009G119900--Sobic004G310300 Sobic009G119900--Sobic004G170400 Sobic009G119900--Sobic004G259200 Sobic007G051000 Sobic007G051000 Sobic009G119900--Sobic007G051000 Sobic001G172000 Sobic001G172000 Sobic009G119900--Sobic001G172000 Sobic006G083500 Sobic006G083500 Sobic009G119900--Sobic006G083500 Sobic009G119900--Sobic010G154700 Sobic002G356400--Sobic002G309700 Sobic002G356400--Sobic001G465800 Sobic002G356400--Sobic009G119900 Sobic002G356400--Sobic001G350600 Sobic002G356400--Sobic004G170400 Sobic002G356400--Sobic004G260200 Sobic002G356400--Sobic001G404800 Sobic002G356400--Sobic004G259200 Sobic002G356400--Sobic003G209000 Sobic003G209000--Sobic004G259200 Sobic003G209000--Sobic001G404800 Sobic003G209000--Sobic002G418400 Sobic001G018500 Sobic001G018500 Sobic003G209000--Sobic001G018500 Sobic003G209000--Sobic006G083500 Sobic003G215700 Sobic003G215700 Sobic003G209000--Sobic003G215700 Sobic003G209000--Sobic007G051000 Sobic003G209000--Sobic009G119900 Sobic002G398901 Sobic002G398901 Sobic003G209000--Sobic002G398901 Sobic004G310300--Sobic009G119900 Sobic004G310300--Sobic004G259200 Sobic004G310300--Sobic007G051000 Sobic004G310300--Sobic001G018500 Sobic010G204500 Sobic010G204500 Sobic004G310300--Sobic010G204500 Sobic003G155400 Sobic003G155400 Sobic004G310300--Sobic003G155400 Sobic004G066800 Sobic004G066800 Sobic004G310300--Sobic004G066800 Sobic001G513500 Sobic001G513500 Sobic004G310300--Sobic001G513500 Sobic005G188100 Sobic005G188100 Sobic004G310300--Sobic005G188100 Sobic002G418400--Sobic006G083500 Sobic002G418400--Sobic003G215700 Sobic002G418400--Sobic003G209000 Sobic002G418400--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic002G418400--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic002G418400--Sobic010G012500 Sobic002G418400--Sobic001G047800 Sobic002G418400--Sobic004G259200 Sobic002G418400--Sobic001G404800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.