Gene annotation
Transcriptome id Sobic.003G155400.1
Synonym Sb03g013550, ATSAR2, ATSARA1C, SAR2, ASAR1
Functional annotation miro, putative, expressed
UniProt C5XJS9
Pfam PF08477
Panther DB PTHR11711 PTHR11711:SF170
NCBI CDD KOG0077; Vesicle coat complex COPII, GTPase subunit SAR1
KEGG Orthology K07953; GTP-binding protein SAR1
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT4G02080 : secretion-associated RAS super family 2
RAP-DB (Rice) LOC_Os01g23620.1 : miro, putative, expressed
MaizeGDB (Corn) Zm00025a036193 , Zm00025a023946 , Zm00025a024454 , Zm00025a029629
Brachypodium KQK03638 , KQJ86341 , KQK04230 , KQK04231
Barley HORVU5Hr1G023140.1 , HORVU5Hr1G023140.3 , HORVU5Hr1G023140.2 , HORVU3Hr1G035000.1 , HORVU3Hr1G035000.3 , HORVU3Hr1G035000.2 , HORVU3Hr1G035000.4 , HORVU3Hr1G045150.4 , HORVU3Hr1G045150.5 , HORVU3Hr1G045150.6 , HORVU3Hr1G045150.1 , HORVU3Hr1G045150.3
Wheat TraesCS3A02G193800 , TraesCS3A02G193800 , TraesCS3D02G179300 , TraesCS3D02G179300 , TraesCS7D02G332100 , TraesCS3A02G172900 , TraesCS7B02G236300 , TraesCS5A02G089200 , TraesCS3B02G203800 , TraesCS5D02G101300 , TraesCS3B02G221700 , TraesCS3D02G196200 , TraesCS5B02G095200
Populus -


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cDNA sequences
Sobic.003G155400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G154700 - -
2 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
3 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
4 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
5 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
6 Sobic.009G119900 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
7 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
8 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
9 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
10 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
11 Sobic.007G134000 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
12 Sobic.003G368500 Yip1 domain containing protein, expressed -
13 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
14 Sobic.009G176000 expressed protein K03945: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 1
15 Sobic.001G084900 expressed protein -
16 Sobic.001G077000 similar to Cold acclimation protein COR413-PM1(PubMedID : 29862293)@cold acclimation protein WCOR413, putative, expressed -
17 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
18 Sobic.005G110800 - -
19 Sobic.001G418900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e


Gene co-expression network
sample Sobic003G155400 Sobic003G155400 Sobic010G154700 Sobic010G154700 Sobic003G155400--Sobic010G154700 Sobic003G209000 Sobic003G209000 Sobic003G155400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic003G155400--Sobic004G310300 Sobic003G072300 Sobic003G072300 Sobic003G155400--Sobic003G072300 Sobic010G018400 Sobic010G018400 Sobic003G155400--Sobic010G018400 Sobic009G119900 Sobic009G119900 Sobic003G155400--Sobic009G119900 Sobic007G051000 Sobic007G051000 Sobic003G155400--Sobic007G051000 Sobic010G204500 Sobic010G204500 Sobic003G155400--Sobic010G204500 Sobic003G215700 Sobic003G215700 Sobic003G155400--Sobic003G215700 Sobic001G048832 Sobic001G048832 Sobic010G154700--Sobic001G048832 Sobic001G132100 Sobic001G132100 Sobic010G154700--Sobic001G132100 Sobic010G154700--Sobic007G051000 Sobic001G074700 Sobic001G074700 Sobic010G154700--Sobic001G074700 Sobic010G154700--Sobic003G155400 Sobic010G154700--Sobic009G119900 Sobic002G190900 Sobic002G190900 Sobic010G154700--Sobic002G190900 Sobic002G398901 Sobic002G398901 Sobic010G154700--Sobic002G398901 Sobic009G176000 Sobic009G176000 Sobic010G154700--Sobic009G176000 Sobic004G259200 Sobic004G259200 Sobic003G209000--Sobic004G259200 Sobic001G404800 Sobic001G404800 Sobic003G209000--Sobic001G404800 Sobic002G418400 Sobic002G418400 Sobic003G209000--Sobic002G418400 Sobic001G018500 Sobic001G018500 Sobic003G209000--Sobic001G018500 Sobic006G083500 Sobic006G083500 Sobic003G209000--Sobic006G083500 Sobic003G209000--Sobic003G215700 Sobic003G209000--Sobic007G051000 Sobic003G209000--Sobic009G119900 Sobic003G209000--Sobic002G398901 Sobic004G310300--Sobic009G119900 Sobic004G310300--Sobic004G259200 Sobic004G310300--Sobic007G051000 Sobic004G310300--Sobic001G018500 Sobic004G310300--Sobic010G204500 Sobic004G310300--Sobic003G155400 Sobic004G066800 Sobic004G066800 Sobic004G310300--Sobic004G066800 Sobic001G513500 Sobic001G513500 Sobic004G310300--Sobic001G513500 Sobic005G188100 Sobic005G188100 Sobic004G310300--Sobic005G188100 Sobic002G081600 Sobic002G081600 Sobic003G072300--Sobic002G081600 Sobic004G205100 Sobic004G205100 Sobic003G072300--Sobic004G205100 Sobic002G187500 Sobic002G187500 Sobic003G072300--Sobic002G187500 Sobic003G072300--Sobic003G209000 Sobic003G072300--Sobic002G190900 Sobic006G213000 Sobic006G213000 Sobic003G072300--Sobic006G213000 Sobic003G072300--Sobic010G204500 Sobic003G072300--Sobic003G155400 Sobic002G379500 Sobic002G379500 Sobic003G072300--Sobic002G379500 Sobic008G129400 Sobic008G129400 Sobic010G018400--Sobic008G129400 Sobic003G368500 Sobic003G368500 Sobic010G018400--Sobic003G368500 Sobic010G018400--Sobic003G155400 Sobic010G018400--Sobic009G176000 Sobic010G018400--Sobic007G051000 Sobic010G018400--Sobic010G154700 Sobic010G018400--Sobic001G132100 Sobic010G018400--Sobic001G048832 Sobic001G445800 Sobic001G445800 Sobic010G018400--Sobic001G445800 Sobic002G356400 Sobic002G356400 Sobic009G119900--Sobic002G356400 Sobic009G119900--Sobic003G209000 Sobic009G119900--Sobic004G310300 Sobic004G170400 Sobic004G170400 Sobic009G119900--Sobic004G170400 Sobic009G119900--Sobic004G259200 Sobic009G119900--Sobic007G051000 Sobic001G172000 Sobic001G172000 Sobic009G119900--Sobic001G172000 Sobic009G119900--Sobic006G083500 Sobic009G119900--Sobic010G154700 Sobic010G012500 Sobic010G012500 Sobic007G051000--Sobic010G012500 Sobic007G051000--Sobic009G176000 Sobic007G051000--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic007G051000--Sobic004G211833 Sobic007G051000--Sobic002G190900 Sobic007G051000--Sobic006G083500 Sobic007G051000--Sobic001G018500 Sobic007G051000--Sobic003G209000 Sobic007G051000--Sobic010G204500 Sobic001G403500 Sobic001G403500 Sobic010G204500--Sobic001G403500 Sobic001G483100 Sobic001G483100 Sobic010G204500--Sobic001G483100 Sobic001G016400 Sobic001G016400 Sobic010G204500--Sobic001G016400 Sobic009G050300 Sobic009G050300 Sobic010G204500--Sobic009G050300 Sobic009G180000 Sobic009G180000 Sobic010G204500--Sobic009G180000 Sobic002G056200 Sobic002G056200 Sobic010G204500--Sobic002G056200 Sobic010G204500--Sobic002G081600 Sobic009G215200 Sobic009G215200 Sobic010G204500--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic010G204500--Sobic001G018900 Sobic003G215700--Sobic006G083500 Sobic003G215700--Sobic002G418400 Sobic001G047800 Sobic001G047800 Sobic003G215700--Sobic001G047800 Sobic003G215700--Sobic003G209000 Sobic003G215700--Sobic004G211833 Sobic003G215700--Sobic001G404800 Sobic004G060500 Sobic004G060500 Sobic003G215700--Sobic004G060500 Sobic001G134400 Sobic001G134400 Sobic003G215700--Sobic001G134400 Sobic003G215700--Sobic010G012500
Octagon: transcription factors


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