Gene annotation
Transcriptome id Sobic.001G224400.1
Synonym eIFiso4E, LSP1, LSP, EIF(ISO)4E, Sb01g019730, EIF4E2
Functional annotation eukaryotic translation initiation factor, putative, expressed
UniProt C5WZC3
Pfam PF01652
Panther DB PTHR11960 PTHR11960:SF12
NCBI CDD KOG1670; Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins
KEGG Orthology K03259; translation initiation factor 4E
Gene Ontology GO:0006413; translational initiation GO:0005737cytoplasm GO:0003743translation initiation factor activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G35620 : Eukaryotic initiation factor 4E protein
RAP-DB (Rice) LOC_Os10g32970.1 : eukaryotic translation initiation factor, putative, expressed
MaizeGDB (Corn) Zm00025a017662 , Zm00025a006679
Brachypodium KQJ97022
Barley HORVU1Hr1G039260.2
Wheat TraesCS1A02G149200 , TraesCS1A02G149200 , TraesCS1B02G167100 , TraesCS1D02G146500
Populus -


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cDNA sequences
Sobic.001G224400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G368500 Yip1 domain containing protein, expressed -
2 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
3 Sobic.002G153500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
4 Sobic.010G154700 - -
5 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
6 Sobic.008G189300 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
7 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
8 Sobic.001G132100 expressed protein -
9 Sobic.002G222900 transmembrane protein 50A, putative, expressed -
10 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
11 Sobic.003G141700 50S ribosomal protein L15, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
12 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
13 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
14 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
15 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
16 Sobic.001G445800 expressed protein -
17 Sobic.004G284500 ORM1, putative, expressed -
18 Sobic.002G190900 expressed protein -
19 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
20 Sobic.009G119900 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein


Gene co-expression network
sample Sobic001G224400 Sobic001G224400 Sobic003G368500 Sobic003G368500 Sobic001G224400--Sobic003G368500 Sobic003G155400 Sobic003G155400 Sobic001G224400--Sobic003G155400 Sobic002G153500 Sobic002G153500 Sobic001G224400--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic001G224400--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic001G224400--Sobic010G213400 Sobic008G189300 Sobic008G189300 Sobic001G224400--Sobic008G189300 Sobic010G153100 Sobic010G153100 Sobic001G224400--Sobic010G153100 Sobic001G132100 Sobic001G132100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900 Sobic003G368500--Sobic010G213400 Sobic010G018400 Sobic010G018400 Sobic003G368500--Sobic010G018400 Sobic003G368500--Sobic001G224400 Sobic003G368500--Sobic003G155400 Sobic004G310300 Sobic004G310300 Sobic003G368500--Sobic004G310300 Sobic004G284500 Sobic004G284500 Sobic003G368500--Sobic004G284500 Sobic005G188100 Sobic005G188100 Sobic003G368500--Sobic005G188100 Sobic007G051000 Sobic007G051000 Sobic003G368500--Sobic007G051000 Sobic001G418900 Sobic001G418900 Sobic003G368500--Sobic001G418900 Sobic003G155400--Sobic010G154700 Sobic003G209000 Sobic003G209000 Sobic003G155400--Sobic003G209000 Sobic003G155400--Sobic004G310300 Sobic003G072300 Sobic003G072300 Sobic003G155400--Sobic003G072300 Sobic003G155400--Sobic010G018400 Sobic009G119900 Sobic009G119900 Sobic003G155400--Sobic009G119900 Sobic003G155400--Sobic007G051000 Sobic010G204500 Sobic010G204500 Sobic003G155400--Sobic010G204500 Sobic003G215700 Sobic003G215700 Sobic003G155400--Sobic003G215700 Sobic002G153500--Sobic001G224400 Sobic002G153500--Sobic008G189300 Sobic002G153500--Sobic004G284500 Sobic004G272800 Sobic004G272800 Sobic002G153500--Sobic004G272800 Sobic004G225500 Sobic004G225500 Sobic002G153500--Sobic004G225500 Sobic002G153500--Sobic001G132100 Sobic008G032100 Sobic008G032100 Sobic002G153500--Sobic008G032100 Sobic007G115100 Sobic007G115100 Sobic002G153500--Sobic007G115100 Sobic004G204900 Sobic004G204900 Sobic002G153500--Sobic004G204900 Sobic001G048832 Sobic001G048832 Sobic010G154700--Sobic001G048832 Sobic010G154700--Sobic001G132100 Sobic010G154700--Sobic007G051000 Sobic001G074700 Sobic001G074700 Sobic010G154700--Sobic001G074700 Sobic010G154700--Sobic003G155400 Sobic010G154700--Sobic009G119900 Sobic002G190900 Sobic002G190900 Sobic010G154700--Sobic002G190900 Sobic002G398901 Sobic002G398901 Sobic010G154700--Sobic002G398901 Sobic009G176000 Sobic009G176000 Sobic010G154700--Sobic009G176000 Sobic010G213400--Sobic003G368500 Sobic003G249800 Sobic003G249800 Sobic010G213400--Sobic003G249800 Sobic009G033700 Sobic009G033700 Sobic010G213400--Sobic009G033700 Sobic010G213400--Sobic004G284500 Sobic010G163600 Sobic010G163600 Sobic010G213400--Sobic010G163600 Sobic010G213400--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic010G213400--Sobic006G062800 Sobic001G445800 Sobic001G445800 Sobic010G213400--Sobic001G445800 Sobic010G213400--Sobic010G153100 Sobic008G189300--Sobic004G225500 Sobic008G189300--Sobic004G272800 Sobic008G189300--Sobic001G224400 Sobic008G189300--Sobic002G153500 Sobic008G189300--Sobic010G154700 Sobic008G189300--Sobic001G132100 Sobic002G187500 Sobic002G187500 Sobic008G189300--Sobic002G187500 Sobic008G189300--Sobic001G048832 Sobic001G340500 Sobic001G340500 Sobic008G189300--Sobic001G340500 Sobic001G084900 Sobic001G084900 Sobic010G153100--Sobic001G084900 Sobic010G153100--Sobic001G224400 Sobic010G153100--Sobic003G155400 Sobic010G153100--Sobic001G445800 Sobic010G153100--Sobic010G154700 Sobic010G153100--Sobic010G213400 Sobic010G153100--Sobic007G115100 Sobic001G067601 Sobic001G067601 Sobic010G153100--Sobic001G067601 Sobic006G141500 Sobic006G141500 Sobic010G153100--Sobic006G141500 Sobic001G132100--Sobic001G048832 Sobic001G132100--Sobic010G154700 Sobic001G132100--Sobic002G190900 Sobic001G132100--Sobic005G188100 Sobic001G132100--Sobic007G051000 Sobic001G132100--Sobic002G398901 Sobic001G132100--Sobic009G119900 Sobic001G132100--Sobic010G018400 Sobic001G132100--Sobic004G272800 Sobic002G222900--Sobic003G155400 Sobic002G222900--Sobic001G224400 Sobic007G134000 Sobic007G134000 Sobic002G222900--Sobic007G134000 Sobic002G222900--Sobic010G154700 Sobic007G068000 Sobic007G068000 Sobic002G222900--Sobic007G068000 Sobic010G225300 Sobic010G225300 Sobic002G222900--Sobic010G225300 Sobic001G459200 Sobic001G459200 Sobic002G222900--Sobic001G459200 Sobic001G128400 Sobic001G128400 Sobic002G222900--Sobic001G128400 Sobic002G222900--Sobic007G051000
Octagon: transcription factors


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