Gene annotation
Transcriptome id Sobic.008G189300.1
Synonym Sb08g022990, ATUBC2-1, UBC15
Functional annotation ubiquitin-conjugating enzyme E2 W, putative, expressed
UniProt C5YT12
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF125
NCBI CDD KOG0427; Ubiquitin conjugating enzyme
KEGG Orthology K10688; UBE2W, ubiquitin-conjugating enzyme E2 W
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G45050 : Ubiquitin-conjugating enzyme family protein
RAP-DB (Rice) LOC_Os03g47770.1 : ubiquitin-conjugating enzyme E2 W, putative, expressed
MaizeGDB (Corn) Zm00025a004858 , Zm00025a025069
Brachypodium PNT65013 , KQJ85619 , KQK13783
Barley HORVU4Hr1G003890.1 , HORVU4Hr1G003890.2 , HORVU0Hr1G000080.2 , HORVU0Hr1G000080.1
Wheat TraesCS4A02G288800 , TraesCS4B02G026000 , TraesCS4B02G026000
Populus -


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cDNA sequences
Sobic.008G189300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G225500 bolA, putative, expressed K05527: BolA family transcriptional regulator, general stress-responsive regulator
2 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
3 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
4 Sobic.002G153500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
5 Sobic.010G154700 - -
6 Sobic.001G132100 expressed protein -
7 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
8 Sobic.001G048832 - -
9 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
10 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
11 Sobic.004G284500 ORM1, putative, expressed -
12 Sobic.001G459200 MYB family transcription factor, putative, expressed -
13 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
14 Sobic.001G445800 expressed protein -
15 Sobic.003G368500 Yip1 domain containing protein, expressed -
16 Sobic.001G288800 nonsense-mediated mRNA decay protein 3, putative, expressed K07562: nonsense-mediated mRNA decay protein 3
17 Sobic.001G281400 expressed protein -
18 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
19 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
20 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3


Gene co-expression network
sample Sobic008G189300 Sobic008G189300 Sobic004G225500 Sobic004G225500 Sobic008G189300--Sobic004G225500 Sobic004G272800 Sobic004G272800 Sobic008G189300--Sobic004G272800 Sobic001G224400 Sobic001G224400 Sobic008G189300--Sobic001G224400 Sobic002G153500 Sobic002G153500 Sobic008G189300--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic008G189300--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic008G189300--Sobic001G132100 Sobic002G187500 Sobic002G187500 Sobic008G189300--Sobic002G187500 Sobic001G048832 Sobic001G048832 Sobic008G189300--Sobic001G048832 Sobic001G340500 Sobic001G340500 Sobic008G189300--Sobic001G340500 Sobic004G225500--Sobic008G189300 Sobic002G155500 Sobic002G155500 Sobic004G225500--Sobic002G155500 Sobic004G225500--Sobic004G272800 Sobic004G300900 Sobic004G300900 Sobic004G225500--Sobic004G300900 Sobic004G225500--Sobic001G048832 Sobic004G225500--Sobic001G340500 Sobic004G225500--Sobic002G153500 Sobic004G225500--Sobic010G154700 Sobic010G121300 Sobic010G121300 Sobic004G225500--Sobic010G121300 Sobic002G267500 Sobic002G267500 Sobic004G272800--Sobic002G267500 Sobic001G281400 Sobic001G281400 Sobic004G272800--Sobic001G281400 Sobic003G253000 Sobic003G253000 Sobic004G272800--Sobic003G253000 Sobic004G272800--Sobic001G048832 Sobic002G190900 Sobic002G190900 Sobic004G272800--Sobic002G190900 Sobic002G345300 Sobic002G345300 Sobic004G272800--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic005G188100 Sobic005G188100 Sobic004G272800--Sobic005G188100 Sobic003G368500 Sobic003G368500 Sobic001G224400--Sobic003G368500 Sobic003G155400 Sobic003G155400 Sobic001G224400--Sobic003G155400 Sobic001G224400--Sobic002G153500 Sobic001G224400--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic001G224400--Sobic010G213400 Sobic001G224400--Sobic008G189300 Sobic010G153100 Sobic010G153100 Sobic001G224400--Sobic010G153100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900 Sobic002G153500--Sobic001G224400 Sobic002G153500--Sobic008G189300 Sobic004G284500 Sobic004G284500 Sobic002G153500--Sobic004G284500 Sobic002G153500--Sobic004G272800 Sobic002G153500--Sobic004G225500 Sobic002G153500--Sobic001G132100 Sobic008G032100 Sobic008G032100 Sobic002G153500--Sobic008G032100 Sobic007G115100 Sobic007G115100 Sobic002G153500--Sobic007G115100 Sobic004G204900 Sobic004G204900 Sobic002G153500--Sobic004G204900 Sobic010G154700--Sobic001G048832 Sobic010G154700--Sobic001G132100 Sobic007G051000 Sobic007G051000 Sobic010G154700--Sobic007G051000 Sobic001G074700 Sobic001G074700 Sobic010G154700--Sobic001G074700 Sobic010G154700--Sobic003G155400 Sobic009G119900 Sobic009G119900 Sobic010G154700--Sobic009G119900 Sobic010G154700--Sobic002G190900 Sobic002G398901 Sobic002G398901 Sobic010G154700--Sobic002G398901 Sobic009G176000 Sobic009G176000 Sobic010G154700--Sobic009G176000 Sobic001G132100--Sobic001G048832 Sobic001G132100--Sobic010G154700 Sobic001G132100--Sobic002G190900 Sobic001G132100--Sobic005G188100 Sobic001G132100--Sobic007G051000 Sobic001G132100--Sobic002G398901 Sobic001G132100--Sobic009G119900 Sobic010G018400 Sobic010G018400 Sobic001G132100--Sobic010G018400 Sobic001G132100--Sobic004G272800 Sobic010G009300 Sobic010G009300 Sobic002G187500--Sobic010G009300 Sobic003G285800 Sobic003G285800 Sobic002G187500--Sobic003G285800 Sobic002G187500--Sobic002G190900 Sobic002G187500--Sobic002G046100 Sobic003G072300 Sobic003G072300 Sobic002G187500--Sobic003G072300 Sobic001G177800 Sobic001G177800 Sobic002G187500--Sobic001G177800 Sobic002G081600 Sobic002G081600 Sobic002G187500--Sobic002G081600 Sobic002G187500--Sobic001G281400 Sobic003G393700 Sobic003G393700 Sobic002G187500--Sobic003G393700 Sobic001G048832--Sobic010G154700 Sobic001G048832--Sobic001G132100 Sobic001G048832--Sobic007G051000 Sobic001G048832--Sobic009G176000 Sobic001G048832--Sobic005G188100 Sobic001G048832--Sobic002G190900 Sobic001G048832--Sobic009G119900 Sobic001G048832--Sobic004G272800 Sobic001G048832--Sobic002G398901 Sobic009G166500 Sobic009G166500 Sobic001G340500--Sobic009G166500 Sobic001G018800 Sobic001G018800 Sobic001G340500--Sobic001G018800 Sobic001G340500--Sobic002G081600 Sobic005G110800 Sobic005G110800 Sobic001G340500--Sobic005G110800 Sobic006G137100 Sobic006G137100 Sobic001G340500--Sobic006G137100 Sobic009G163800 Sobic009G163800 Sobic001G340500--Sobic009G163800 Sobic003G346600 Sobic003G346600 Sobic001G340500--Sobic003G346600 Sobic006G147000 Sobic006G147000 Sobic001G340500--Sobic006G147000 Sobic003G018600 Sobic003G018600 Sobic001G340500--Sobic003G018600
Octagon: transcription factors


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