Gene annotation
Transcriptome id Sobic.001G288800.1
Synonym Sb01g028310
Functional annotation nonsense-mediated mRNA decay protein 3, putative, expressed
UniProt C5WRC0
Pfam PF04981
Panther DB PTHR12746 PTHR12746:SF2
NCBI CDD -
KEGG Orthology K07562; nonsense-mediated mRNA decay protein 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G03820 : nonsense-mediated mRNA decay NMD3 family protein
RAP-DB (Rice) LOC_Os10g42320.1 : nonsense-mediated mRNA decay protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a051837 , Zm00025a003476
Brachypodium KQJ97914
Barley HORVU1Hr1G050300.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G288800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
2 Sobic.010G150575 - -
3 Sobic.001G281400 expressed protein -
4 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
5 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
6 Sobic.010G243200 ZOS6-08 - C2H2 zinc finger protein, expressed K14816: pre-60S factor REI1
7 Sobic.003G321700 KH domain containing protein, putative, expressed K11884: PNO1, RNA-binding protein PNO1
8 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
9 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
10 Sobic.001G459200 MYB family transcription factor, putative, expressed -
11 Sobic.006G141500 expressed protein -
12 Sobic.004G284500 ORM1, putative, expressed -
13 Sobic.001G499300 high-affinity nickel-transport family protein, putative, expressed -
14 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
15 Sobic.006G010600 peptidyl-prolyl cis-trans isomerase, putative, expressed K09578: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
16 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
17 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
18 Sobic.009G232000 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
19 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
20 Sobic.008G189300 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W


Gene co-expression network
sample Sobic001G288800 Sobic001G288800 Sobic003G181500 Sobic003G181500 Sobic001G288800--Sobic003G181500 Sobic010G150575 Sobic010G150575 Sobic001G288800--Sobic010G150575 Sobic001G281400 Sobic001G281400 Sobic001G288800--Sobic001G281400 Sobic003G350300 Sobic003G350300 Sobic001G288800--Sobic003G350300 Sobic001G177800 Sobic001G177800 Sobic001G288800--Sobic001G177800 Sobic010G243200 Sobic010G243200 Sobic001G288800--Sobic010G243200 Sobic003G321700 Sobic003G321700 Sobic001G288800--Sobic003G321700 Sobic004G187900 Sobic004G187900 Sobic001G288800--Sobic004G187900 Sobic006G173900 Sobic006G173900 Sobic001G288800--Sobic006G173900 Sobic003G181500--Sobic004G187900 Sobic003G181500--Sobic003G350300 Sobic010G149300 Sobic010G149300 Sobic003G181500--Sobic010G149300 Sobic003G249800 Sobic003G249800 Sobic003G181500--Sobic003G249800 Sobic003G181500--Sobic001G288800 Sobic003G181500--Sobic001G281400 Sobic009G023200 Sobic009G023200 Sobic003G181500--Sobic009G023200 Sobic002G211900 Sobic002G211900 Sobic003G181500--Sobic002G211900 Sobic002G046100 Sobic002G046100 Sobic003G181500--Sobic002G046100 Sobic001G011200 Sobic001G011200 Sobic010G150575--Sobic001G011200 Sobic010G150575--Sobic003G321700 Sobic001G016400 Sobic001G016400 Sobic010G150575--Sobic001G016400 Sobic001G091801 Sobic001G091801 Sobic010G150575--Sobic001G091801 Sobic004G198400 Sobic004G198400 Sobic010G150575--Sobic004G198400 Sobic002G374900 Sobic002G374900 Sobic010G150575--Sobic002G374900 Sobic009G166500 Sobic009G166500 Sobic010G150575--Sobic009G166500 Sobic001G018800 Sobic001G018800 Sobic010G150575--Sobic001G018800 Sobic004G145801 Sobic004G145801 Sobic010G150575--Sobic004G145801 Sobic001G281400--Sobic004G187900 Sobic002G267500 Sobic002G267500 Sobic001G281400--Sobic002G267500 Sobic001G281400--Sobic010G149300 Sobic002G190900 Sobic002G190900 Sobic001G281400--Sobic002G190900 Sobic001G281400--Sobic002G046100 Sobic010G086200 Sobic010G086200 Sobic001G281400--Sobic010G086200 Sobic009G141800 Sobic009G141800 Sobic001G281400--Sobic009G141800 Sobic009G008900 Sobic009G008900 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300 Sobic003G350300--Sobic004G187900 Sobic002G345300 Sobic002G345300 Sobic003G350300--Sobic002G345300 Sobic003G350300--Sobic002G046100 Sobic003G285800 Sobic003G285800 Sobic003G350300--Sobic003G285800 Sobic003G350300--Sobic001G281400 Sobic004G321300 Sobic004G321300 Sobic003G350300--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic003G350300--Sobic010G274900 Sobic003G350300--Sobic010G086200 Sobic003G350300--Sobic003G181500 Sobic007G184600 Sobic007G184600 Sobic001G177800--Sobic007G184600 Sobic009G139400 Sobic009G139400 Sobic001G177800--Sobic009G139400 Sobic001G374700 Sobic001G374700 Sobic001G177800--Sobic001G374700 Sobic001G402050 Sobic001G402050 Sobic001G177800--Sobic001G402050 Sobic007G227300 Sobic007G227300 Sobic001G177800--Sobic007G227300 Sobic002G200600 Sobic002G200600 Sobic001G177800--Sobic002G200600 Sobic004G189400 Sobic004G189400 Sobic001G177800--Sobic004G189400 Sobic006G099900 Sobic006G099900 Sobic001G177800--Sobic006G099900 Sobic010G009300 Sobic010G009300 Sobic001G177800--Sobic010G009300 Sobic006G141500 Sobic006G141500 Sobic010G243200--Sobic006G141500 Sobic002G282400 Sobic002G282400 Sobic010G243200--Sobic002G282400 Sobic002G218000 Sobic002G218000 Sobic010G243200--Sobic002G218000 Sobic010G243200--Sobic003G350300 Sobic010G243200--Sobic003G321700 Sobic010G243200--Sobic001G177800 Sobic010G243200--Sobic003G181500 Sobic010G243200--Sobic001G288800 Sobic002G187500 Sobic002G187500 Sobic010G243200--Sobic002G187500 Sobic007G212600 Sobic007G212600 Sobic003G321700--Sobic007G212600 Sobic010G260100 Sobic010G260100 Sobic003G321700--Sobic010G260100 Sobic003G321700--Sobic001G091801 Sobic007G190800 Sobic007G190800 Sobic003G321700--Sobic007G190800 Sobic003G322400 Sobic003G322400 Sobic003G321700--Sobic003G322400 Sobic010G259900 Sobic010G259900 Sobic003G321700--Sobic010G259900 Sobic003G321700--Sobic004G145801 Sobic006G147000 Sobic006G147000 Sobic003G321700--Sobic006G147000 Sobic004G104100 Sobic004G104100 Sobic003G321700--Sobic004G104100 Sobic004G187900--Sobic001G281400 Sobic001G124600 Sobic001G124600 Sobic004G187900--Sobic001G124600 Sobic002G140400 Sobic002G140400 Sobic004G187900--Sobic002G140400 Sobic004G187900--Sobic009G141800 Sobic004G187900--Sobic004G321300 Sobic004G187900--Sobic003G350300 Sobic004G187900--Sobic009G008900 Sobic001G477300 Sobic001G477300 Sobic004G187900--Sobic001G477300 Sobic008G136400 Sobic008G136400 Sobic004G187900--Sobic008G136400 Sobic006G173900--Sobic009G008900 Sobic010G099900 Sobic010G099900 Sobic006G173900--Sobic010G099900 Sobic002G393000 Sobic002G393000 Sobic006G173900--Sobic002G393000 Sobic006G275200 Sobic006G275200 Sobic006G173900--Sobic006G275200 Sobic006G173900--Sobic008G136400 Sobic002G414600 Sobic002G414600 Sobic006G173900--Sobic002G414600 Sobic001G119400 Sobic001G119400 Sobic006G173900--Sobic001G119400 Sobic001G423800 Sobic001G423800 Sobic006G173900--Sobic001G423800 Sobic004G177700 Sobic004G177700 Sobic006G173900--Sobic004G177700
Octagon: transcription factors


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