Gene annotation
Transcriptome id Sobic.010G150575.1
Synonym -
Functional annotation -
UniProt A0A1W0VT88
Pfam PF03719
Panther DB PTHR13718 PTHR13718:SF69
NCBI CDD KOG0877; 40S ribosomal protein S2/30S ribosomal protein S5
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G41840 : Ribosomal protein S5 family protein
RAP-DB (Rice) LOC_Os03g59310.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK20398
Barley HORVU3Hr1G086050.4 , HORVU3Hr1G086050.1 , HORVU3Hr1G086050.2 , HORVU5Hr1G109910.5 , HORVU5Hr1G109910.4 , HORVU3Hr1G086050.3 , HORVU5Hr1G109910.2
Wheat TraesCS3D02G338200 , TraesCS5B02G468500 , TraesCS3B02G376600 , TraesCS5A02G458900 , TraesCS3A02G366100 , TraesCS5D02G470000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
2 Sobic.003G321700 KH domain containing protein, putative, expressed K11884: PNO1, RNA-binding protein PNO1
3 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
4 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
5 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
6 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
7 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
8 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
9 Sobic.004G145801 - K02978: RP-S27e, small subunit ribosomal protein S27e
10 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13
11 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
12 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
13 Sobic.009G242400 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
14 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
15 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
16 Sobic.001G288800 nonsense-mediated mRNA decay protein 3, putative, expressed K07562: nonsense-mediated mRNA decay protein 3
17 Sobic.001G014500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
18 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
19 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
20 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e


Gene co-expression network
sample Sobic010G150575 Sobic010G150575 Sobic001G011200 Sobic001G011200 Sobic010G150575--Sobic001G011200 Sobic003G321700 Sobic003G321700 Sobic010G150575--Sobic003G321700 Sobic001G016400 Sobic001G016400 Sobic010G150575--Sobic001G016400 Sobic001G091801 Sobic001G091801 Sobic010G150575--Sobic001G091801 Sobic004G198400 Sobic004G198400 Sobic010G150575--Sobic004G198400 Sobic002G374900 Sobic002G374900 Sobic010G150575--Sobic002G374900 Sobic009G166500 Sobic009G166500 Sobic010G150575--Sobic009G166500 Sobic001G018800 Sobic001G018800 Sobic010G150575--Sobic001G018800 Sobic004G145801 Sobic004G145801 Sobic010G150575--Sobic004G145801 Sobic001G436200 Sobic001G436200 Sobic001G011200--Sobic001G436200 Sobic001G011200--Sobic002G374900 Sobic001G011200--Sobic001G091801 Sobic002G056200 Sobic002G056200 Sobic001G011200--Sobic002G056200 Sobic001G011200--Sobic004G198400 Sobic003G280700 Sobic003G280700 Sobic001G011200--Sobic003G280700 Sobic001G403500 Sobic001G403500 Sobic001G011200--Sobic001G403500 Sobic001G046300 Sobic001G046300 Sobic001G011200--Sobic001G046300 Sobic001G011200--Sobic001G016400 Sobic007G212600 Sobic007G212600 Sobic003G321700--Sobic007G212600 Sobic010G260100 Sobic010G260100 Sobic003G321700--Sobic010G260100 Sobic003G321700--Sobic001G091801 Sobic007G190800 Sobic007G190800 Sobic003G321700--Sobic007G190800 Sobic003G322400 Sobic003G322400 Sobic003G321700--Sobic003G322400 Sobic010G259900 Sobic010G259900 Sobic003G321700--Sobic010G259900 Sobic003G321700--Sobic004G145801 Sobic006G147000 Sobic006G147000 Sobic003G321700--Sobic006G147000 Sobic004G104100 Sobic004G104100 Sobic003G321700--Sobic004G104100 Sobic009G050300 Sobic009G050300 Sobic001G016400--Sobic009G050300 Sobic009G215200 Sobic009G215200 Sobic001G016400--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic001G016400--Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic001G016400--Sobic006G116700 Sobic007G197800 Sobic007G197800 Sobic001G016400--Sobic007G197800 Sobic001G402050 Sobic001G402050 Sobic001G016400--Sobic001G402050 Sobic007G018300 Sobic007G018300 Sobic001G016400--Sobic007G018300 Sobic001G016400--Sobic001G403500 Sobic002G081600 Sobic002G081600 Sobic001G016400--Sobic002G081600 Sobic001G091801--Sobic004G145801 Sobic001G091801--Sobic004G104100 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic009G163800 Sobic009G163800 Sobic001G091801--Sobic009G163800 Sobic005G019700 Sobic005G019700 Sobic001G091801--Sobic005G019700 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic004G198400--Sobic001G403500 Sobic002G379500 Sobic002G379500 Sobic004G198400--Sobic002G379500 Sobic004G198400--Sobic009G050300 Sobic010G206200 Sobic010G206200 Sobic004G198400--Sobic010G206200 Sobic004G280700 Sobic004G280700 Sobic004G198400--Sobic004G280700 Sobic006G213000 Sobic006G213000 Sobic004G198400--Sobic006G213000 Sobic009G054800 Sobic009G054800 Sobic004G198400--Sobic009G054800 Sobic006G221200 Sobic006G221200 Sobic004G198400--Sobic006G221200 Sobic006G137100 Sobic006G137100 Sobic004G198400--Sobic006G137100 Sobic002G374900--Sobic001G436200 Sobic002G374900--Sobic001G091801 Sobic002G374900--Sobic004G198400 Sobic002G374900--Sobic001G016400 Sobic002G374900--Sobic001G011200 Sobic002G374900--Sobic009G050300 Sobic007G019000 Sobic007G019000 Sobic002G374900--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic002G374900--Sobic010G166100 Sobic002G374900--Sobic004G104100 Sobic006G047400 Sobic006G047400 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic003G346600 Sobic003G346600 Sobic009G166500--Sobic003G346600 Sobic009G166500--Sobic009G050300 Sobic009G166500--Sobic001G091801 Sobic009G166500--Sobic002G081600 Sobic001G374700 Sobic001G374700 Sobic009G166500--Sobic001G374700 Sobic009G166500--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic009G166500--Sobic010G060500 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic001G018800--Sobic006G137100 Sobic001G018800--Sobic006G213000 Sobic009G227400 Sobic009G227400 Sobic001G018800--Sobic009G227400 Sobic003G018600 Sobic003G018600 Sobic001G018800--Sobic003G018600 Sobic001G018800--Sobic009G166500 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic010G023900 Sobic010G023900 Sobic001G018800--Sobic010G023900 Sobic004G145801--Sobic001G091801 Sobic004G145801--Sobic004G104100 Sobic004G145801--Sobic005G019700 Sobic004G145801--Sobic007G212600 Sobic010G230700 Sobic010G230700 Sobic004G145801--Sobic010G230700 Sobic004G103800 Sobic004G103800 Sobic004G145801--Sobic004G103800 Sobic004G145801--Sobic004G280700 Sobic001G054900 Sobic001G054900 Sobic004G145801--Sobic001G054900 Sobic004G104300 Sobic004G104300 Sobic004G145801--Sobic004G104300
Octagon: transcription factors


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