Gene annotation
Transcriptome id Sobic.009G242400.1
Synonym Sb09g029400
Functional annotation ribosomal protein L7Ae, putative, expressed
UniProt C5YW39
Pfam PF01248
Panther DB PTHR11843
NCBI CDD KOG3406; 40S ribosomal protein S12
KEGG Orthology K02951; RP-S12e, small subunit ribosomal protein S12e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G32060 : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
RAP-DB (Rice) LOC_Os07g05580.1 : ribosomal protein L7Ae, putative, expressed
MaizeGDB (Corn) Zm00025a013380 , Zm00025a037352 , Zm00025a044677 , Zm00025a045440
Brachypodium KQK12873 , KQK12872 , KQK20310
Barley HORVU5Hr1G103330.10 , HORVU5Hr1G103330.9 , HORVU5Hr1G103330.8 , HORVU5Hr1G103330.7 , HORVU2Hr1G053290.10 , HORVU5Hr1G103330.5 , HORVU5Hr1G103330.3 , HORVU5Hr1G103330.2 , HORVU2Hr1G053290.9 , HORVU2Hr1G053290.8 , HORVU2Hr1G053290.5 , HORVU2Hr1G053290.4 , HORVU2Hr1G053290.7 , HORVU2Hr1G053290.6 , HORVU2Hr1G053290.1 , HORVU2Hr1G053290.3 , HORVU2Hr1G053290.2 , HORVU5Hr1G103330.6
Wheat TraesCS5B02G425100 , TraesCS5D02G431700
Populus -


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cDNA sequences
Sobic.009G242400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
2 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
3 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
4 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
5 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
6 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
7 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13
8 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
9 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
10 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
11 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
12 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
13 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
14 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
15 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
16 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
17 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
18 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
19 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
20 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae


Gene co-expression network
sample Sobic009G242400 Sobic009G242400 Sobic006G213000 Sobic006G213000 Sobic009G242400--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic009G242400--Sobic001G226500 Sobic006G137100 Sobic006G137100 Sobic009G242400--Sobic006G137100 Sobic003G387900 Sobic003G387900 Sobic009G242400--Sobic003G387900 Sobic002G081600 Sobic002G081600 Sobic009G242400--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G242400--Sobic003G346600 Sobic004G280700 Sobic004G280700 Sobic009G242400--Sobic004G280700 Sobic006G067800 Sobic006G067800 Sobic009G242400--Sobic006G067800 Sobic009G050300 Sobic009G050300 Sobic009G242400--Sobic009G050300 Sobic006G213000--Sobic006G137100 Sobic007G053300 Sobic007G053300 Sobic006G213000--Sobic007G053300 Sobic009G076400 Sobic009G076400 Sobic006G213000--Sobic009G076400 Sobic006G213000--Sobic003G387900 Sobic002G379500 Sobic002G379500 Sobic006G213000--Sobic002G379500 Sobic002G056200 Sobic002G056200 Sobic006G213000--Sobic002G056200 Sobic007G019400 Sobic007G019400 Sobic006G213000--Sobic007G019400 Sobic006G213000--Sobic002G081600 Sobic001G403500 Sobic001G403500 Sobic006G213000--Sobic001G403500 Sobic003G249700 Sobic003G249700 Sobic001G226500--Sobic003G249700 Sobic001G226500--Sobic007G019400 Sobic001G226500--Sobic009G076400 Sobic004G008400 Sobic004G008400 Sobic001G226500--Sobic004G008400 Sobic002G286900 Sobic002G286900 Sobic001G226500--Sobic002G286900 Sobic001G226500--Sobic007G053300 Sobic001G226500--Sobic006G213000 Sobic001G130301 Sobic001G130301 Sobic001G226500--Sobic001G130301 Sobic009G054800 Sobic009G054800 Sobic001G226500--Sobic009G054800 Sobic006G137100--Sobic006G213000 Sobic006G137100--Sobic003G387900 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic006G137100--Sobic003G346600 Sobic006G137100--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic006G137100--Sobic010G060500 Sobic006G137100--Sobic004G008400 Sobic002G047600 Sobic002G047600 Sobic006G137100--Sobic002G047600 Sobic003G387900--Sobic006G137100 Sobic003G387900--Sobic006G213000 Sobic003G387900--Sobic002G379500 Sobic003G387900--Sobic007G019400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic010G069400 Sobic010G069400 Sobic003G387900--Sobic010G069400 Sobic003G387900--Sobic002G056200 Sobic002G081600--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic002G081600--Sobic006G116700 Sobic002G081600--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic002G081600--Sobic009G215200 Sobic001G374700 Sobic001G374700 Sobic002G081600--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic002G081600--Sobic002G200600 Sobic002G081600--Sobic006G067800 Sobic009G166500 Sobic009G166500 Sobic002G081600--Sobic009G166500 Sobic002G081600--Sobic001G403500 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic003G346600--Sobic002G081600 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic009G163800 Sobic009G163800 Sobic003G346600--Sobic009G163800 Sobic007G178600 Sobic007G178600 Sobic003G346600--Sobic007G178600 Sobic003G346600--Sobic006G116700 Sobic003G346600--Sobic006G137100 Sobic004G198400 Sobic004G198400 Sobic004G280700--Sobic004G198400 Sobic001G091801 Sobic001G091801 Sobic004G280700--Sobic001G091801 Sobic004G280700--Sobic009G215200 Sobic004G280700--Sobic009G166500 Sobic004G280700--Sobic006G213000 Sobic004G280700--Sobic009G050300 Sobic006G047400 Sobic006G047400 Sobic004G280700--Sobic006G047400 Sobic004G280700--Sobic006G116700 Sobic010G206200 Sobic010G206200 Sobic004G280700--Sobic010G206200 Sobic006G067800--Sobic002G200600 Sobic006G067800--Sobic002G081600 Sobic001G402050 Sobic001G402050 Sobic006G067800--Sobic001G402050 Sobic006G067800--Sobic006G116700 Sobic006G067800--Sobic009G050300 Sobic006G067800--Sobic009G215200 Sobic007G197800 Sobic007G197800 Sobic006G067800--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic006G067800--Sobic003G436700 Sobic006G067800--Sobic001G130301 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500
Octagon: transcription factors


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