Gene annotation
Transcriptome id Sobic.001G340500.1
Synonym Sb01g032730, SNRNP-G
Functional annotation LSM domain containing protein, expressed
UniProt C5WWN1
Pfam PF01423
Panther DB PTHR10553 PTHR10553:SF9
NCBI CDD KOG1780; Small Nuclear ribonucleoprotein G
KEGG Orthology K11099; SNRPG, small nuclear ribonucleoprotein G
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G23930 : probable small nuclear ribonucleoprotein G
RAP-DB (Rice) LOC_Os03g29740.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ90999
Barley HORVU2Hr1G031890.7 , HORVU2Hr1G031890.6 , HORVU2Hr1G031890.5 , HORVU2Hr1G031890.4 , HORVU2Hr1G031890.3 , HORVU2Hr1G031890.2 , HORVU2Hr1G031890.1
Wheat TraesCS2B02G198200
Populus -


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cDNA sequences
Sobic.001G340500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
2 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
3 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
4 Sobic.005G110800 - -
5 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
6 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
7 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
8 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
9 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
10 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
11 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
12 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
13 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
14 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
15 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
16 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
17 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
18 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
19 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
20 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e


Gene co-expression network
sample Sobic001G340500 Sobic001G340500 Sobic009G166500 Sobic009G166500 Sobic001G340500--Sobic009G166500 Sobic001G018800 Sobic001G018800 Sobic001G340500--Sobic001G018800 Sobic002G081600 Sobic002G081600 Sobic001G340500--Sobic002G081600 Sobic005G110800 Sobic005G110800 Sobic001G340500--Sobic005G110800 Sobic006G137100 Sobic006G137100 Sobic001G340500--Sobic006G137100 Sobic009G163800 Sobic009G163800 Sobic001G340500--Sobic009G163800 Sobic003G346600 Sobic003G346600 Sobic001G340500--Sobic003G346600 Sobic006G147000 Sobic006G147000 Sobic001G340500--Sobic006G147000 Sobic003G018600 Sobic003G018600 Sobic001G340500--Sobic003G018600 Sobic006G047400 Sobic006G047400 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic009G166500--Sobic003G346600 Sobic009G050300 Sobic009G050300 Sobic009G166500--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic009G166500--Sobic001G091801 Sobic009G166500--Sobic002G081600 Sobic001G374700 Sobic001G374700 Sobic009G166500--Sobic001G374700 Sobic001G403500 Sobic001G403500 Sobic009G166500--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic009G166500--Sobic010G060500 Sobic001G018800--Sobic001G340500 Sobic001G018800--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic001G018800--Sobic006G213000 Sobic009G227400 Sobic009G227400 Sobic001G018800--Sobic009G227400 Sobic001G018800--Sobic003G018600 Sobic001G018800--Sobic009G166500 Sobic001G011200 Sobic001G011200 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic010G023900 Sobic010G023900 Sobic001G018800--Sobic010G023900 Sobic002G081600--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic002G081600--Sobic006G116700 Sobic002G081600--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic002G081600--Sobic009G215200 Sobic002G081600--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic002G081600--Sobic002G200600 Sobic006G067800 Sobic006G067800 Sobic002G081600--Sobic006G067800 Sobic002G081600--Sobic009G166500 Sobic002G081600--Sobic001G403500 Sobic005G110800--Sobic009G166500 Sobic002G286900 Sobic002G286900 Sobic005G110800--Sobic002G286900 Sobic001G493001 Sobic001G493001 Sobic005G110800--Sobic001G493001 Sobic005G110800--Sobic002G081600 Sobic005G110800--Sobic009G050300 Sobic004G008400 Sobic004G008400 Sobic005G110800--Sobic004G008400 Sobic005G110800--Sobic009G163800 Sobic005G110800--Sobic003G346600 Sobic001G130301 Sobic001G130301 Sobic005G110800--Sobic001G130301 Sobic006G137100--Sobic006G213000 Sobic003G387900 Sobic003G387900 Sobic006G137100--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic006G137100--Sobic003G346600 Sobic006G137100--Sobic001G403500 Sobic006G137100--Sobic010G060500 Sobic006G137100--Sobic004G008400 Sobic002G047600 Sobic002G047600 Sobic006G137100--Sobic002G047600 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic009G163800--Sobic006G047400 Sobic003G408100 Sobic003G408100 Sobic009G163800--Sobic003G408100 Sobic004G331400 Sobic004G331400 Sobic009G163800--Sobic004G331400 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic003G346600--Sobic002G081600 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic003G346600--Sobic009G163800 Sobic007G178600 Sobic007G178600 Sobic003G346600--Sobic007G178600 Sobic003G346600--Sobic006G116700 Sobic003G346600--Sobic006G137100 Sobic006G147000--Sobic003G346600 Sobic006G147000--Sobic009G163800 Sobic006G147000--Sobic010G060500 Sobic006G147000--Sobic009G166500 Sobic006G147000--Sobic002G081600 Sobic006G147000--Sobic007G178600 Sobic003G322400 Sobic003G322400 Sobic006G147000--Sobic003G322400 Sobic006G147000--Sobic009G050300 Sobic007G212600 Sobic007G212600 Sobic006G147000--Sobic007G212600 Sobic003G018600--Sobic002G286900 Sobic006G115000 Sobic006G115000 Sobic003G018600--Sobic006G115000 Sobic003G018600--Sobic009G166500 Sobic001G377800 Sobic001G377800 Sobic003G018600--Sobic001G377800 Sobic003G018600--Sobic005G110800 Sobic003G018600--Sobic009G050300 Sobic003G018600--Sobic006G137100 Sobic003G018600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic003G018600--Sobic003G249700
Octagon: transcription factors


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