Gene annotation
Transcriptome id Sobic.005G110800.1
Synonym Sb05g012453
Functional annotation -
UniProt C5Y267
Pfam PF08186
Panther DB PTHR36752
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07230 : wound-responsive protein-related
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium KQJ86856
Barley HORVU2Hr1G102330.2
Wheat TraesCS2D02G439300 , TraesCS2B02G461800 , TraesCS2A02G441600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G110800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
2 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
3 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
4 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
5 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
6 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
7 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
8 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
9 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
10 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
11 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
12 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
13 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
14 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
15 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
16 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
17 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
18 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
19 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
20 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e


Gene co-expression network
sample Sobic005G110800 Sobic005G110800 Sobic009G166500 Sobic009G166500 Sobic005G110800--Sobic009G166500 Sobic002G286900 Sobic002G286900 Sobic005G110800--Sobic002G286900 Sobic001G493001 Sobic001G493001 Sobic005G110800--Sobic001G493001 Sobic002G081600 Sobic002G081600 Sobic005G110800--Sobic002G081600 Sobic009G050300 Sobic009G050300 Sobic005G110800--Sobic009G050300 Sobic004G008400 Sobic004G008400 Sobic005G110800--Sobic004G008400 Sobic009G163800 Sobic009G163800 Sobic005G110800--Sobic009G163800 Sobic003G346600 Sobic003G346600 Sobic005G110800--Sobic003G346600 Sobic001G130301 Sobic001G130301 Sobic005G110800--Sobic001G130301 Sobic006G047400 Sobic006G047400 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic009G166500--Sobic003G346600 Sobic009G166500--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic009G166500--Sobic001G091801 Sobic009G166500--Sobic002G081600 Sobic001G374700 Sobic001G374700 Sobic009G166500--Sobic001G374700 Sobic001G403500 Sobic001G403500 Sobic009G166500--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic009G166500--Sobic010G060500 Sobic006G137100 Sobic006G137100 Sobic002G286900--Sobic006G137100 Sobic008G108601 Sobic008G108601 Sobic002G286900--Sobic008G108601 Sobic002G286900--Sobic004G008400 Sobic002G286900--Sobic009G050300 Sobic001G226500 Sobic001G226500 Sobic002G286900--Sobic001G226500 Sobic002G286900--Sobic001G403500 Sobic003G249700 Sobic003G249700 Sobic002G286900--Sobic003G249700 Sobic002G286900--Sobic005G110800 Sobic007G178600 Sobic007G178600 Sobic002G286900--Sobic007G178600 Sobic001G493001--Sobic001G130301 Sobic001G493001--Sobic001G374700 Sobic001G493001--Sobic006G047400 Sobic007G184600 Sobic007G184600 Sobic001G493001--Sobic007G184600 Sobic001G402050 Sobic001G402050 Sobic001G493001--Sobic001G402050 Sobic001G493001--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic001G493001--Sobic001G018900 Sobic001G493001--Sobic002G081600 Sobic002G200600 Sobic002G200600 Sobic001G493001--Sobic002G200600 Sobic002G081600--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic002G081600--Sobic006G116700 Sobic002G081600--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic002G081600--Sobic009G215200 Sobic002G081600--Sobic001G374700 Sobic002G081600--Sobic002G200600 Sobic006G067800 Sobic006G067800 Sobic002G081600--Sobic006G067800 Sobic002G081600--Sobic009G166500 Sobic002G081600--Sobic001G403500 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic004G008400--Sobic006G116700 Sobic002G255300 Sobic002G255300 Sobic004G008400--Sobic002G255300 Sobic004G008400--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic004G008400--Sobic003G436700 Sobic004G008400--Sobic006G137100 Sobic004G008400--Sobic002G379500 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic009G163800--Sobic006G047400 Sobic003G408100 Sobic003G408100 Sobic009G163800--Sobic003G408100 Sobic004G331400 Sobic004G331400 Sobic009G163800--Sobic004G331400 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic003G346600--Sobic002G081600 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic003G346600--Sobic009G163800 Sobic003G346600--Sobic007G178600 Sobic003G346600--Sobic006G116700 Sobic003G346600--Sobic006G137100 Sobic001G130301--Sobic009G215200 Sobic001G130301--Sobic007G197800 Sobic001G130301--Sobic006G116700 Sobic001G130301--Sobic001G018900 Sobic001G130301--Sobic001G493001 Sobic001G130301--Sobic001G402050 Sobic001G130301--Sobic009G050300 Sobic001G130301--Sobic002G200600 Sobic001G130301--Sobic001G374700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.