Gene annotation
Transcriptome id Sobic.009G232000.1
Synonym Sb09g028470
Functional annotation ribosomal protein L24, putative, expressed
UniProt C5YVJ6
Pfam PF01246
Panther DB PTHR10792 PTHR10792:SF8
NCBI CDD KOG1723; 60s ribosomal protein L30 isolog
KEGG Orthology K02896; RP-L24e, large subunit ribosomal protein L24e
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44860 : Ribosomal protein L24e family protein
RAP-DB (Rice) LOC_Os07g19190.1 : ribosomal protein L24, putative, expressed
MaizeGDB (Corn) Zm00025a048935
Brachypodium KQJ85771 , KQK02686
Barley HORVU5Hr1G008730.9 , HORVU5Hr1G008730.8 , HORVU5Hr1G008730.5 , HORVU5Hr1G008730.4 , HORVU5Hr1G008730.7 , HORVU5Hr1G008730.6 , HORVU5Hr1G008730.1 , HORVU5Hr1G008730.3 , HORVU5Hr1G008730.2
Wheat TraesCS5D02G040500 , TraesCS5A02G032200
Populus -


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cDNA sequences
Sobic.009G232000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
2 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
3 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
4 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
5 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
6 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
7 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
8 Sobic.003G321700 KH domain containing protein, putative, expressed K11884: PNO1, RNA-binding protein PNO1
9 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
10 Sobic.004G198500 Brix domain containing protein, putative, expressed K14820: BRX1, ribosome biogenesis protein BRX1
11 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
12 Sobic.008G004000 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
13 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
14 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
15 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
16 Sobic.008G130400 prefoldin, putative, expressed -
17 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
18 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
19 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
20 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e


Gene co-expression network
sample Sobic009G232000 Sobic009G232000 Sobic001G018800 Sobic001G018800 Sobic009G232000--Sobic001G018800 Sobic001G011200 Sobic001G011200 Sobic009G232000--Sobic001G011200 Sobic001G513500 Sobic001G513500 Sobic009G232000--Sobic001G513500 Sobic001G436200 Sobic001G436200 Sobic009G232000--Sobic001G436200 Sobic002G056200 Sobic002G056200 Sobic009G232000--Sobic002G056200 Sobic001G377800 Sobic001G377800 Sobic009G232000--Sobic001G377800 Sobic010G100000 Sobic010G100000 Sobic009G232000--Sobic010G100000 Sobic003G321700 Sobic003G321700 Sobic009G232000--Sobic003G321700 Sobic006G213000 Sobic006G213000 Sobic009G232000--Sobic006G213000 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic006G137100 Sobic006G137100 Sobic001G018800--Sobic006G137100 Sobic001G018800--Sobic006G213000 Sobic009G227400 Sobic009G227400 Sobic001G018800--Sobic009G227400 Sobic003G018600 Sobic003G018600 Sobic001G018800--Sobic003G018600 Sobic009G166500 Sobic009G166500 Sobic001G018800--Sobic009G166500 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic010G023900 Sobic010G023900 Sobic001G018800--Sobic010G023900 Sobic001G011200--Sobic001G436200 Sobic002G374900 Sobic002G374900 Sobic001G011200--Sobic002G374900 Sobic001G091801 Sobic001G091801 Sobic001G011200--Sobic001G091801 Sobic001G011200--Sobic002G056200 Sobic004G198400 Sobic004G198400 Sobic001G011200--Sobic004G198400 Sobic003G280700 Sobic003G280700 Sobic001G011200--Sobic003G280700 Sobic001G403500 Sobic001G403500 Sobic001G011200--Sobic001G403500 Sobic001G046300 Sobic001G046300 Sobic001G011200--Sobic001G046300 Sobic001G016400 Sobic001G016400 Sobic001G011200--Sobic001G016400 Sobic001G513500--Sobic001G011200 Sobic001G513500--Sobic002G056200 Sobic003G129800 Sobic003G129800 Sobic001G513500--Sobic003G129800 Sobic005G050500 Sobic005G050500 Sobic001G513500--Sobic005G050500 Sobic001G334300 Sobic001G334300 Sobic001G513500--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic001G513500--Sobic009G179100 Sobic004G310300 Sobic004G310300 Sobic001G513500--Sobic004G310300 Sobic005G091700 Sobic005G091700 Sobic001G513500--Sobic005G091700 Sobic001G513500--Sobic010G100000 Sobic002G379500 Sobic002G379500 Sobic001G436200--Sobic002G379500 Sobic002G047600 Sobic002G047600 Sobic001G436200--Sobic002G047600 Sobic001G436200--Sobic002G056200 Sobic001G436200--Sobic001G016400 Sobic001G436200--Sobic002G374900 Sobic006G138100 Sobic006G138100 Sobic001G436200--Sobic006G138100 Sobic001G436200--Sobic006G213000 Sobic001G016500 Sobic001G016500 Sobic001G436200--Sobic001G016500 Sobic001G436200--Sobic006G137100 Sobic002G056200--Sobic002G379500 Sobic002G056200--Sobic006G137100 Sobic002G056200--Sobic001G403500 Sobic002G056200--Sobic006G213000 Sobic007G019400 Sobic007G019400 Sobic002G056200--Sobic007G019400 Sobic003G387900 Sobic003G387900 Sobic002G056200--Sobic003G387900 Sobic003G109600 Sobic003G109600 Sobic002G056200--Sobic003G109600 Sobic002G056200--Sobic001G436200 Sobic002G056200--Sobic002G047600 Sobic002G406500 Sobic002G406500 Sobic001G377800--Sobic002G406500 Sobic004G104100 Sobic004G104100 Sobic001G377800--Sobic004G104100 Sobic001G085400 Sobic001G085400 Sobic001G377800--Sobic001G085400 Sobic001G377800--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic001G377800--Sobic007G019000 Sobic006G221200 Sobic006G221200 Sobic001G377800--Sobic006G221200 Sobic006G081100 Sobic006G081100 Sobic001G377800--Sobic006G081100 Sobic002G049300 Sobic002G049300 Sobic001G377800--Sobic002G049300 Sobic009G050300 Sobic009G050300 Sobic001G377800--Sobic009G050300 Sobic010G100000--Sobic001G513500 Sobic010G100000--Sobic001G011200 Sobic010G100000--Sobic005G050500 Sobic010G100000--Sobic001G436200 Sobic010G100000--Sobic003G280700 Sobic001G481700 Sobic001G481700 Sobic010G100000--Sobic001G481700 Sobic010G100000--Sobic005G091700 Sobic010G100000--Sobic001G018800 Sobic010G100000--Sobic002G406500 Sobic007G212600 Sobic007G212600 Sobic003G321700--Sobic007G212600 Sobic010G260100 Sobic010G260100 Sobic003G321700--Sobic010G260100 Sobic003G321700--Sobic001G091801 Sobic007G190800 Sobic007G190800 Sobic003G321700--Sobic007G190800 Sobic003G322400 Sobic003G322400 Sobic003G321700--Sobic003G322400 Sobic010G259900 Sobic010G259900 Sobic003G321700--Sobic010G259900 Sobic004G145801 Sobic004G145801 Sobic003G321700--Sobic004G145801 Sobic006G147000 Sobic006G147000 Sobic003G321700--Sobic006G147000 Sobic003G321700--Sobic004G104100 Sobic006G213000--Sobic006G137100 Sobic007G053300 Sobic007G053300 Sobic006G213000--Sobic007G053300 Sobic009G076400 Sobic009G076400 Sobic006G213000--Sobic009G076400 Sobic006G213000--Sobic003G387900 Sobic006G213000--Sobic002G379500 Sobic006G213000--Sobic002G056200 Sobic006G213000--Sobic007G019400 Sobic002G081600 Sobic002G081600 Sobic006G213000--Sobic002G081600 Sobic006G213000--Sobic001G403500
Octagon: transcription factors


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