Gene annotation
Transcriptome id Sobic.008G004000.1,Sobic.008G004000.2
Synonym Sb08g000490
Functional annotation ribosomal protein L10, putative, expressed
UniProt A0A1B6PBE5 , A0A1B6PAM3
Pfam PF00466
Panther DB PTHR21141 PTHR21141:SF37
NCBI CDD KOG0816; Protein involved in mRNA turnover
KEGG Orthology K14815; mRNA turnover protein 4
Gene Ontology GO:0005622; intracellular


Orthologs (automatic annotation)
TAIR AT1G25260 : Ribosomal protein L10 family protein
RAP-DB (Rice) LOC_Os11g01420.1,LOC_Os12g01430.2 : ribosomal protein L10, putative, expressed
MaizeGDB (Corn) Zm00025a028933 , Zm00025a012803 , Zm00025a013218
Brachypodium KQJ92639
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G003800 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
2 Sobic.009G232000 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
3 Sobic.009G190300 Brix domain containing protein, putative, expressed K14847: ribosome production factor 2
4 Sobic.009G065400 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
5 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
6 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
7 Sobic.001G216200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
8 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
9 Sobic.002G364500 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
10 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
11 Sobic.002G364100 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
12 Sobic.008G130400 prefoldin, putative, expressed -
13 Sobic.004G198500 Brix domain containing protein, putative, expressed K14820: BRX1, ribosome biogenesis protein BRX1
14 Sobic.001G046300 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
15 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
16 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
17 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
18 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
19 Sobic.010G173100 elongation factor 1-gamma, putative, expressed K03233: elongation factor 1-gamma
20 Sobic.001G014500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3


Gene co-expression network
sample Sobic008G004000 Sobic008G004000 Sobic005G003800 Sobic005G003800 Sobic008G004000--Sobic005G003800 Sobic009G232000 Sobic009G232000 Sobic008G004000--Sobic009G232000 Sobic009G190300 Sobic009G190300 Sobic008G004000--Sobic009G190300 Sobic009G065400 Sobic009G065400 Sobic008G004000--Sobic009G065400 Sobic001G018800 Sobic001G018800 Sobic008G004000--Sobic001G018800 Sobic001G011200 Sobic001G011200 Sobic008G004000--Sobic001G011200 Sobic001G216200 Sobic001G216200 Sobic008G004000--Sobic001G216200 Sobic010G100000 Sobic010G100000 Sobic008G004000--Sobic010G100000 Sobic002G364500 Sobic002G364500 Sobic008G004000--Sobic002G364500 Sobic005G003800--Sobic008G004000 Sobic005G003800--Sobic009G190300 Sobic005G003800--Sobic001G018800 Sobic005G003800--Sobic010G100000 Sobic001G481700 Sobic001G481700 Sobic005G003800--Sobic001G481700 Sobic005G003800--Sobic009G232000 Sobic005G003800--Sobic009G065400 Sobic002G364100 Sobic002G364100 Sobic005G003800--Sobic002G364100 Sobic010G046300 Sobic010G046300 Sobic005G003800--Sobic010G046300 Sobic009G232000--Sobic001G018800 Sobic009G232000--Sobic001G011200 Sobic001G513500 Sobic001G513500 Sobic009G232000--Sobic001G513500 Sobic001G436200 Sobic001G436200 Sobic009G232000--Sobic001G436200 Sobic002G056200 Sobic002G056200 Sobic009G232000--Sobic002G056200 Sobic001G377800 Sobic001G377800 Sobic009G232000--Sobic001G377800 Sobic009G232000--Sobic010G100000 Sobic003G321700 Sobic003G321700 Sobic009G232000--Sobic003G321700 Sobic006G213000 Sobic006G213000 Sobic009G232000--Sobic006G213000 Sobic009G190300--Sobic005G003800 Sobic009G190300--Sobic008G004000 Sobic009G190300--Sobic001G481700 Sobic002G341800 Sobic002G341800 Sobic009G190300--Sobic002G341800 Sobic003G338100 Sobic003G338100 Sobic009G190300--Sobic003G338100 Sobic002G394600 Sobic002G394600 Sobic009G190300--Sobic002G394600 Sobic001G091900 Sobic001G091900 Sobic009G190300--Sobic001G091900 Sobic001G404100 Sobic001G404100 Sobic009G190300--Sobic001G404100 Sobic004G216400 Sobic004G216400 Sobic009G190300--Sobic004G216400 Sobic001G046300 Sobic001G046300 Sobic009G065400--Sobic001G046300 Sobic010G182600 Sobic010G182600 Sobic009G065400--Sobic010G182600 Sobic003G025200 Sobic003G025200 Sobic009G065400--Sobic003G025200 Sobic009G065400--Sobic001G011200 Sobic009G065400--Sobic002G364100 Sobic009G065400--Sobic001G377800 Sobic002G259000 Sobic002G259000 Sobic009G065400--Sobic002G259000 Sobic002G374900 Sobic002G374900 Sobic009G065400--Sobic002G374900 Sobic010G182300 Sobic010G182300 Sobic009G065400--Sobic010G182300 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic006G137100 Sobic006G137100 Sobic001G018800--Sobic006G137100 Sobic001G018800--Sobic006G213000 Sobic009G227400 Sobic009G227400 Sobic001G018800--Sobic009G227400 Sobic003G018600 Sobic003G018600 Sobic001G018800--Sobic003G018600 Sobic009G166500 Sobic009G166500 Sobic001G018800--Sobic009G166500 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic010G023900 Sobic010G023900 Sobic001G018800--Sobic010G023900 Sobic001G011200--Sobic001G436200 Sobic001G011200--Sobic002G374900 Sobic001G091801 Sobic001G091801 Sobic001G011200--Sobic001G091801 Sobic001G011200--Sobic002G056200 Sobic004G198400 Sobic004G198400 Sobic001G011200--Sobic004G198400 Sobic003G280700 Sobic003G280700 Sobic001G011200--Sobic003G280700 Sobic001G403500 Sobic001G403500 Sobic001G011200--Sobic001G403500 Sobic001G011200--Sobic001G046300 Sobic001G016400 Sobic001G016400 Sobic001G011200--Sobic001G016400 Sobic008G058300 Sobic008G058300 Sobic001G216200--Sobic008G058300 Sobic007G186300 Sobic007G186300 Sobic001G216200--Sobic007G186300 Sobic001G216200--Sobic008G004000 Sobic003G248600 Sobic003G248600 Sobic001G216200--Sobic003G248600 Sobic004G300900 Sobic004G300900 Sobic001G216200--Sobic004G300900 Sobic001G415500 Sobic001G415500 Sobic001G216200--Sobic001G415500 Sobic001G402300 Sobic001G402300 Sobic001G216200--Sobic001G402300 Sobic001G054200 Sobic001G054200 Sobic001G216200--Sobic001G054200 Sobic004G107600 Sobic004G107600 Sobic001G216200--Sobic004G107600 Sobic010G100000--Sobic001G513500 Sobic010G100000--Sobic001G011200 Sobic005G050500 Sobic005G050500 Sobic010G100000--Sobic005G050500 Sobic010G100000--Sobic001G436200 Sobic010G100000--Sobic003G280700 Sobic010G100000--Sobic001G481700 Sobic005G091700 Sobic005G091700 Sobic010G100000--Sobic005G091700 Sobic010G100000--Sobic001G018800 Sobic002G406500 Sobic002G406500 Sobic010G100000--Sobic002G406500 Sobic002G364500--Sobic002G364100 Sobic003G363800 Sobic003G363800 Sobic002G364500--Sobic003G363800 Sobic002G364500--Sobic001G046300 Sobic001G085400 Sobic001G085400 Sobic002G364500--Sobic001G085400 Sobic002G364500--Sobic001G011200 Sobic002G364500--Sobic001G091801 Sobic009G163800 Sobic009G163800 Sobic002G364500--Sobic009G163800 Sobic002G364500--Sobic001G436200 Sobic002G364500--Sobic010G182600
Octagon: transcription factors


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