Gene annotation
Transcriptome id Sobic.002G364100.1
Synonym Sb02g038365
Functional annotation 40S ribosomal protein S3a, putative, expressed
UniProt C5XD91
Pfam PF01015
Panther DB PTHR11830
NCBI CDD KOG1628; 40S ribosomal protein S3A
KEGG Orthology K02984; RP-S3Ae, small subunit ribosomal protein S3Ae
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G34670 : Ribosomal protein S3Ae
RAP-DB (Rice) LOC_Os03g10340.1 : 40S ribosomal protein S3a, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU1Hr1G032060.8 , HORVU1Hr1G032060.5 , HORVU1Hr1G032060.4 , HORVU1Hr1G032060.6 , HORVU1Hr1G032060.1 , HORVU1Hr1G032060.2 , HORVU1Hr1G032060.3 , HORVU1Hr1G032060.7
Wheat -
Populus -


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cDNA sequences
Sobic.002G364100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G364500 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
2 Sobic.001G046300 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
3 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
4 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
5 Sobic.009G022400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
6 Sobic.010G182600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
7 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
8 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
9 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
10 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
11 Sobic.002G259000 ribosomal protein L7Ae, putative, expressed K02936: RP-L7Ae, large subunit ribosomal protein L7Ae
12 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
13 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
14 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
15 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
16 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
17 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
18 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
19 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
20 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e


Gene co-expression network
sample Sobic002G364100 Sobic002G364100 Sobic002G364500 Sobic002G364500 Sobic002G364100--Sobic002G364500 Sobic001G046300 Sobic001G046300 Sobic002G364100--Sobic001G046300 Sobic009G163800 Sobic009G163800 Sobic002G364100--Sobic009G163800 Sobic006G260400 Sobic006G260400 Sobic002G364100--Sobic006G260400 Sobic009G022400 Sobic009G022400 Sobic002G364100--Sobic009G022400 Sobic010G182600 Sobic010G182600 Sobic002G364100--Sobic010G182600 Sobic001G091801 Sobic001G091801 Sobic002G364100--Sobic001G091801 Sobic010G166100 Sobic010G166100 Sobic002G364100--Sobic010G166100 Sobic004G331400 Sobic004G331400 Sobic002G364100--Sobic004G331400 Sobic002G364500--Sobic002G364100 Sobic003G363800 Sobic003G363800 Sobic002G364500--Sobic003G363800 Sobic002G364500--Sobic001G046300 Sobic001G085400 Sobic001G085400 Sobic002G364500--Sobic001G085400 Sobic001G011200 Sobic001G011200 Sobic002G364500--Sobic001G011200 Sobic002G364500--Sobic001G091801 Sobic002G364500--Sobic009G163800 Sobic001G436200 Sobic001G436200 Sobic002G364500--Sobic001G436200 Sobic002G364500--Sobic010G182600 Sobic007G212600 Sobic007G212600 Sobic001G046300--Sobic007G212600 Sobic004G103800 Sobic004G103800 Sobic001G046300--Sobic004G103800 Sobic001G046300--Sobic001G091801 Sobic001G046300--Sobic002G364100 Sobic002G259000 Sobic002G259000 Sobic001G046300--Sobic002G259000 Sobic004G104100 Sobic004G104100 Sobic001G046300--Sobic004G104100 Sobic001G046300--Sobic001G011200 Sobic004G104300 Sobic004G104300 Sobic001G046300--Sobic004G104300 Sobic001G046300--Sobic009G163800 Sobic009G166500 Sobic009G166500 Sobic009G163800--Sobic009G166500 Sobic009G050300 Sobic009G050300 Sobic009G163800--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic006G047400 Sobic006G047400 Sobic009G163800--Sobic006G047400 Sobic003G408100 Sobic003G408100 Sobic009G163800--Sobic003G408100 Sobic009G163800--Sobic004G331400 Sobic002G081600 Sobic002G081600 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic006G260400--Sobic004G331400 Sobic002G255300 Sobic002G255300 Sobic006G260400--Sobic002G255300 Sobic006G260400--Sobic003G346600 Sobic007G178600 Sobic007G178600 Sobic006G260400--Sobic007G178600 Sobic010G206200 Sobic010G206200 Sobic006G260400--Sobic010G206200 Sobic006G260400--Sobic009G163800 Sobic006G260400--Sobic010G166100 Sobic001G376600 Sobic001G376600 Sobic006G260400--Sobic001G376600 Sobic006G221200 Sobic006G221200 Sobic006G260400--Sobic006G221200 Sobic002G049300 Sobic002G049300 Sobic009G022400--Sobic002G049300 Sobic009G022400--Sobic007G178600 Sobic009G022400--Sobic001G085400 Sobic001G175300 Sobic001G175300 Sobic009G022400--Sobic001G175300 Sobic009G022400--Sobic006G221200 Sobic009G022400--Sobic009G163800 Sobic003G280700 Sobic003G280700 Sobic009G022400--Sobic003G280700 Sobic008G108601 Sobic008G108601 Sobic009G022400--Sobic008G108601 Sobic009G022400--Sobic004G104100 Sobic010G182600--Sobic002G259000 Sobic010G182600--Sobic001G046300 Sobic010G182200 Sobic010G182200 Sobic010G182600--Sobic010G182200 Sobic010G182600--Sobic002G364100 Sobic004G145801 Sobic004G145801 Sobic010G182600--Sobic004G145801 Sobic010G182600--Sobic001G091801 Sobic009G065400 Sobic009G065400 Sobic010G182600--Sobic009G065400 Sobic002G406500 Sobic002G406500 Sobic010G182600--Sobic002G406500 Sobic010G182600--Sobic002G364500 Sobic001G091801--Sobic004G145801 Sobic001G091801--Sobic004G104100 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic001G091801--Sobic009G163800 Sobic005G019700 Sobic005G019700 Sobic001G091801--Sobic005G019700 Sobic003G322400 Sobic003G322400 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic010G166100--Sobic004G104100 Sobic010G166100--Sobic006G221200 Sobic010G166100--Sobic004G103800 Sobic010G166100--Sobic007G178600 Sobic007G019000 Sobic007G019000 Sobic010G166100--Sobic007G019000 Sobic004G322200 Sobic004G322200 Sobic010G166100--Sobic004G322200 Sobic010G166100--Sobic006G260400 Sobic010G166100--Sobic001G085400 Sobic002G047600 Sobic002G047600 Sobic010G166100--Sobic002G047600 Sobic004G331400--Sobic002G175100 Sobic004G331400--Sobic001G376600 Sobic004G331400--Sobic009G163800 Sobic009G105700 Sobic009G105700 Sobic004G331400--Sobic009G105700 Sobic004G331400--Sobic003G408100 Sobic004G331400--Sobic003G346600 Sobic004G331400--Sobic009G050300 Sobic004G331400--Sobic007G178600 Sobic004G331400--Sobic001G091801
Octagon: transcription factors


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