Gene annotation
Transcriptome id Sobic.009G022400.1
Synonym Sb09g001930
Functional annotation ribosomal protein L13, putative, expressed
UniProt C5YZ01
Pfam PF00572
Panther DB PTHR11545 PTHR11545:SF3
NCBI CDD KOG3204; 60S ribosomal protein L13a
KEGG Orthology K02872; RP-L13Ae, large subunit ribosomal protein L13Ae
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome GO:0015934large ribosomal subunit


Orthologs (automatic annotation)
TAIR AT5G48760 : Ribosomal protein L13 family protein
RAP-DB (Rice) LOC_Os03g54890.1 : ribosomal protein L13, putative, expressed
MaizeGDB (Corn) Zm00025a008206 , Zm00025a016777
Brachypodium KQK21195 , KQK13135
Barley HORVU2Hr1G063880.5 , HORVU2Hr1G063880.4 , HORVU2Hr1G063880.1
Wheat TraesCS5D02G402800 , TraesCS5A02G541100 , TraesCS2D02G263000 , TraesCS2A02G260700 , TraesCS5B02G397800 , TraesCS2B02G281300 , TraesCS5A02G392900
Populus -


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cDNA sequences
Sobic.009G022400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
2 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
3 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
4 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
5 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
6 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
7 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
8 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
9 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
10 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
11 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
12 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
13 Sobic.002G364100 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
14 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
15 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
16 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
17 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
18 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
19 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
20 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta


Gene co-expression network
sample Sobic009G022400 Sobic009G022400 Sobic002G049300 Sobic002G049300 Sobic009G022400--Sobic002G049300 Sobic007G178600 Sobic007G178600 Sobic009G022400--Sobic007G178600 Sobic001G085400 Sobic001G085400 Sobic009G022400--Sobic001G085400 Sobic001G175300 Sobic001G175300 Sobic009G022400--Sobic001G175300 Sobic006G221200 Sobic006G221200 Sobic009G022400--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic009G022400--Sobic009G163800 Sobic003G280700 Sobic003G280700 Sobic009G022400--Sobic003G280700 Sobic008G108601 Sobic008G108601 Sobic009G022400--Sobic008G108601 Sobic004G104100 Sobic004G104100 Sobic009G022400--Sobic004G104100 Sobic002G049300--Sobic001G085400 Sobic002G049300--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic002G049300--Sobic002G047600 Sobic002G049300--Sobic009G022400 Sobic002G049300--Sobic008G108601 Sobic003G249700 Sobic003G249700 Sobic002G049300--Sobic003G249700 Sobic001G436200 Sobic001G436200 Sobic002G049300--Sobic001G436200 Sobic006G137100 Sobic006G137100 Sobic002G049300--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic002G049300--Sobic002G286900 Sobic004G008400 Sobic004G008400 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic003G346600 Sobic003G346600 Sobic007G178600--Sobic003G346600 Sobic009G050300 Sobic009G050300 Sobic007G178600--Sobic009G050300 Sobic007G178600--Sobic008G108601 Sobic007G178600--Sobic006G221200 Sobic007G178600--Sobic009G163800 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic002G115000 Sobic002G115000 Sobic001G085400--Sobic002G115000 Sobic002G304900 Sobic002G304900 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic003G387900 Sobic003G387900 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic010G206200 Sobic010G206200 Sobic001G175300--Sobic010G206200 Sobic001G403500 Sobic001G403500 Sobic001G175300--Sobic001G403500 Sobic004G198400 Sobic004G198400 Sobic001G175300--Sobic004G198400 Sobic001G175300--Sobic009G050300 Sobic003G078200 Sobic003G078200 Sobic001G175300--Sobic003G078200 Sobic009G054800 Sobic009G054800 Sobic001G175300--Sobic009G054800 Sobic001G175300--Sobic002G286900 Sobic009G242300 Sobic009G242300 Sobic001G175300--Sobic009G242300 Sobic002G372400 Sobic002G372400 Sobic001G175300--Sobic002G372400 Sobic006G221200--Sobic004G104100 Sobic010G166100 Sobic010G166100 Sobic006G221200--Sobic010G166100 Sobic006G221200--Sobic007G178600 Sobic010G230700 Sobic010G230700 Sobic006G221200--Sobic010G230700 Sobic006G221200--Sobic004G198400 Sobic007G019400 Sobic007G019400 Sobic006G221200--Sobic007G019400 Sobic001G091801 Sobic001G091801 Sobic006G221200--Sobic001G091801 Sobic006G221200--Sobic010G206200 Sobic005G019700 Sobic005G019700 Sobic006G221200--Sobic005G019700 Sobic009G166500 Sobic009G166500 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic006G047400 Sobic006G047400 Sobic009G163800--Sobic006G047400 Sobic003G408100 Sobic003G408100 Sobic009G163800--Sobic003G408100 Sobic004G331400 Sobic004G331400 Sobic009G163800--Sobic004G331400 Sobic002G081600 Sobic002G081600 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic003G280700--Sobic002G049300 Sobic001G011200 Sobic001G011200 Sobic003G280700--Sobic001G011200 Sobic006G081100 Sobic006G081100 Sobic003G280700--Sobic006G081100 Sobic005G050500 Sobic005G050500 Sobic003G280700--Sobic005G050500 Sobic003G280700--Sobic001G085400 Sobic003G280700--Sobic004G198400 Sobic002G056200 Sobic002G056200 Sobic003G280700--Sobic002G056200 Sobic003G280700--Sobic009G022400 Sobic003G280700--Sobic001G403500 Sobic008G108601--Sobic007G178600 Sobic008G108601--Sobic004G008400 Sobic008G108601--Sobic002G286900 Sobic008G108601--Sobic003G249700 Sobic008G108601--Sobic002G047600 Sobic008G108601--Sobic007G019400 Sobic008G108601--Sobic010G206200 Sobic008G108601--Sobic002G049300 Sobic001G226500 Sobic001G226500 Sobic008G108601--Sobic001G226500 Sobic004G104100--Sobic001G091801 Sobic004G104100--Sobic006G221200 Sobic004G103800 Sobic004G103800 Sobic004G104100--Sobic004G103800 Sobic004G104100--Sobic010G230700 Sobic004G104100--Sobic010G166100 Sobic004G104300 Sobic004G104300 Sobic004G104100--Sobic004G104300 Sobic004G104100--Sobic005G019700 Sobic004G104100--Sobic009G166500 Sobic004G104100--Sobic009G050300
Octagon: transcription factors


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